标题
Shambhala: a platform-agnostic data harmonizer for gene expression data
作者
关键词
Transcriptome, Gene expression, Microarray hybridization, Next-generation sequencing, Harmonization of transcriptional profiles, Comparison of multiple datasets
出版物
BMC BIOINFORMATICS
Volume 20, Issue 1, Pages -
出版商
Springer Nature
发表日期
2019-02-06
DOI
10.1186/s12859-019-2641-8
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Gene‑gene interaction network analysis of hepatocellular carcinoma using bioinformatic software
- (2018) Jin‑Hua He et al. Oncology Letters
- A semi-parametric statistical model for integrating gene expression profiles across different platforms
- (2016) Yafei Lyu et al. BMC BIOINFORMATICS
- Comprehensive Assessments of RNA-seq by the SEQC Consortium: FDA-Led Efforts Advance Precision Medicine
- (2016) Joshua Xu et al. Pharmaceutics
- Seq-ing improved gene expression estimates from microarrays using machine learning
- (2015) Paul K. Korir et al. BMC BIOINFORMATICS
- Sphericalk-Means Clustering
- (2015) Kurt Hornik et al. Journal of Statistical Software
- A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium
- (2014) NATURE BIOTECHNOLOGY
- PLIDA: cross-platform gene expression normalization using perturbed topic models
- (2013) Amit G. Deshwar et al. BIOINFORMATICS
- Investigating the concordance of Gene Ontology terms reveals the intra- and inter-platform reproducibility of enrichment analysis
- (2013) Lifang Zhang et al. BMC BIOINFORMATICS
- The Genotype-Tissue Expression (GTEx) project
- (2013) John Lonsdale et al. NATURE GENETICS
- Cross-Platform Prediction of Gene Expression Signatures
- (2013) Shu-Hong Lin et al. PLoS One
- R/DWD: distance-weighted discrimination for classification, visualization and batch adjustment
- (2012) Hanwen Huang et al. BIOINFORMATICS
- Empirical comparison of cross-platform normalization methods for gene expression data
- (2011) Jason Rudy et al. BMC BIOINFORMATICS
- Frozen robust multiarray analysis (fRMA)
- (2010) M. N. McCall et al. BIOSTATISTICS
- Evaluation of gene expression data generated from expired Affymetrix GeneChip® microarrays using MAQC reference RNA samples
- (2010) Zhining Wen et al. BMC BIOINFORMATICS
- How to Deal with Batch Effect in Sequential Microarray Experiments?
- (2010) Nino Demetrashvili et al. Molecular Informatics
- Differential expression analysis for sequence count data
- (2010) Simon Anders et al. GENOME BIOLOGY
- WebArrayDB: cross-platform microarray data analysis and public data repository
- (2009) Xiao-Qin Xia et al. BIOINFORMATICS
- Merging two gene-expression studies via cross-platform normalization
- (2008) Andrey A. Shabalin et al. BIOINFORMATICS
- Empirical Bayes accomodation of batch-effects in microarray data using identical replicate reference samples: application to RNA expression profiling of blood from Duchenne muscular dystrophy patients
- (2008) Wynn L Walker et al. BMC GENOMICS
- Performance comparison of two microarray platforms to assess differential gene expression in human monocyte and macrophage cells
- (2008) Seraya Maouche et al. BMC GENOMICS
- Comprehensive genomic characterization defines human glioblastoma genes and core pathways
- (2008) Roger McLendon et al. NATURE
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started