Computational discovery and annotation of conserved small open reading frames in fungal genomes

The Glaciozyma antarctica genome reveals an array of systems that provide sustained responses towards temperature variations in a persistently cold habitat

(2018) Mohd Firdaus-Raih et al.   PLoS One

The Long History of the Diverse Roles of Short ORFs: sPEPs in Fungi

(2018) Paige E. Erpf et al.   PROTEOMICS

Pengenalpastian dan Profil Pengekspresan Gen Biosintesis Asid Amino Yis Psikrofil, Glaciozyma Antarctica

(2018) Izwan Bharudin et al.   Sains Malaysiana

CPC2: a fast and accurate coding potential calculator based on sequence intrinsic features

(2017) Yu-Jian Kang et al.   NUCLEIC ACIDS RESEARCH

Identification of sRNA mediated responses to nutrient depletion in Burkholderia pseudomallei

(2017) Hirzahida Mohd-Padil et al.   Scientific Reports

Thermotolerance and molecular chaperone function of an SGT1-like protein from the psychrophilic yeast, Glaciozyma antarctica

(2016) Nur Athirah Yusof et al.   CELL STRESS & CHAPERONES

Comparative Expression Dynamics of Intergenic Long Noncoding RNAs in the GenusDrosophila

(2016) Kevin G. Nyberg et al.   Genome Biology and Evolution

Small Open Reading Frames, Non-Coding RNAs and Repetitive Elements in Bradyrhizobium japonicum USDA 110

(2016) Julia Hahn et al.   PLoS One

Yeast Pmp3p has an important role in plasma membrane organization

(2015) J. De Block et al.   JOURNAL OF CELL SCIENCE

IGF-I regulates the age-dependent signaling peptide humanin

(2014) Changhan Lee et al.   AGING CELL

Emerging evidence for functional peptides encoded by short open reading frames

(2014) Shea J. Andrews et al.   NATURE REVIEWS GENETICS

Molecular cloning, expression and characterisation of Afp4, an antifreeze protein from Glaciozyma antarctica

(2014) Noor Haza Fazlin Hashim et al.   POLAR BIOLOGY

Small open reading frames associated with morphogenesis are hidden in plant genomes

(2013) K. Hanada et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Humanin: a harbinger of mitochondrial-derived peptides?

(2013) Changhan Lee et al.   TRENDS IN ENDOCRINOLOGY AND METABOLISM

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

Characterization of Afp1, an antifreeze protein from the psychrophilic yeast Glaciozyma antarctica PI12

(2012) Noor Haza Fazlin Hashim et al.   EXTREMOPHILES

Peptidomic discovery of short open reading frame–encoded peptides in human cells

(2012) Sarah A Slavoff et al.   Nature Chemical Biology

Hundreds of putatively functional small open reading frames in Drosophila

(2011) Emmanuel Ladoukakis et al.   GENOME BIOLOGY

CD-HIT Suite: a web server for clustering and comparing biological sequences

(2010) Ying Huang et al.   BIOINFORMATICS

sORF finder: a program package to identify small open reading frames with high coding potential

(2009) Kousuke Hanada et al.   BIOINFORMATICS

The 11-aminoacid long Tarsal-less peptides trigger a cell signal in Drosophila leg development

(2008) Jose Ignacio Pueyo et al.   DEVELOPMENTAL BIOLOGY

Small membrane proteins found by comparative genomics and ribosome binding site models

(2008) Matthew R. Hemm et al.   MOLECULAR MICROBIOLOGY

Silencing a Candidate Nematode Effector Gene Corresponding to the Tomato Resistance Gene Mi-1 Leads to Acquisition of Virulence

(2008) Cynthia A. Gleason et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

High-throughput functional annotation and data mining with the Blast2GO suite

(2008) S. Gotz et al.   NUCLEIC ACIDS RESEARCH