Phylogeography of a widespread eastern North American shrub, Viburnum lantanoides

Sterile marginal flowers increase visitation and fruit set in the hobblebush (Viburnum lantanoides, Adoxaceae) at multiple spatial scales

(2018) Brian Park et al.   ANNALS OF BOTANY

Genomic evidence of a widespread southern distribution during the Last Glacial Maximum for two eastern North American hickory species

(2018) Jordan B. Bemmels et al.   JOURNAL OF BIOGEOGRAPHY

RAD-seq data reveal a cryptic Viburnum species on the North American Coastal Plain

(2018) Elizabeth L Spriggs et al.   SYSTEMATIC BIOLOGY

Post-glacial phylogeography and evolution of a wide-ranging highly-exploited keystone forest tree, eastern white pine (Pinus strobus) in North America: single refugium, multiple routes

(2016) John W. R. Zinck et al.   BMC EVOLUTIONARY BIOLOGY

Multiple glacial refugia lead to genetic structuring and the potential for reproductive isolation in a herbaceous plant

(2015) Karen B. Barnard-Kubow et al.   AMERICAN JOURNAL OF BOTANY

Rethinking refugia: Tree topology, divergence dates, and demographic history trace the distribution of the endangered Plymouth gentian (Sabatia kennedyana) from the Pleistocene glaciation to present day

(2015) Adriana Suarez-Gonzalez et al.   AMERICAN JOURNAL OF BOTANY

Contrasting patterns of genetic diversity across the ranges of Pinus monticola and P. strobus : A comparison between eastern and western North American postglacial colonization histories

(2015) Simon Nadeau et al.   AMERICAN JOURNAL OF BOTANY

Large scale patterns of genetic variation and differentiation in sugar maple from tropical Central America to temperate North America

(2015) Yalma L. Vargas-Rodriguez et al.   BMC EVOLUTIONARY BIOLOGY

Chloroplast phylogeography of Dirca palustris L. indicates populations near the glacial boundary at the Last Glacial Maximum in eastern North America

(2015) Bryan J. Peterson et al.   JOURNAL OF BIOGEOGRAPHY

Computationally Efficient Composite Likelihood Statistics for Demographic Inference

(2015) Alec J. Coffman et al.   MOLECULAR BIOLOGY AND EVOLUTION

Multiple glacial refugia for cool-temperate deciduous trees in northern East Asia: the Mongolian oak as a case study

(2015) Yan-Fei Zeng et al.   MOLECULAR ECOLOGY

TESS3: fast inference of spatial population structure and genome scans for selection

(2015) Kevin Caye et al.   Molecular Ecology Resources

Temperate radiations and dying embers of a tropical past: the diversification ofViburnum

(2015) Elizabeth L. Spriggs et al.   NEW PHYTOLOGIST

LEA: AnRpackage for landscape and ecological association studies

(2015) Eric Frichot et al.   Methods in Ecology and Evolution

A Short Guide to the Climatic Variables of the Last Glacial Maximum for Biogeographers

(2015) Sara Varela et al.   PLoS One

Quartet Inference from SNP Data Under the Coalescent Model

(2014) Julia Chifman et al.   BIOINFORMATICS

PyRAD: assembly of de novo RADseq loci for phylogenetic analyses

(2014) Deren A. R. Eaton   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Fast and Efficient Estimation of Individual Ancestry Coefficients

(2014) Eric Frichot et al.   GENETICS

A similar phylogeographical structure among sympatric North American birches (Betula) is better explained by introgression than by shared biogeographical history

(2014) Ashley M. Thomson et al.   JOURNAL OF BIOGEOGRAPHY

Climate refugia: joint inference from fossil records, species distribution models and phylogeography

(2014) Daniel G. Gavin et al.   NEW PHYTOLOGIST

Protocol: a simple method for extracting next-generation sequencing quality genomic DNA from recalcitrant plant species

(2014) Adam Healey et al.   Plant Methods

Unforeseen Consequences of Excluding Missing Data from Next-Generation Sequences: Simulation Study of RAD Sequences

(2014) Huateng Huang et al.   SYSTEMATIC BIOLOGY

Poppr: an R package for genetic analysis of populations with clonal, partially clonal, and/or sexual reproduction

(2014) Zhian N. Kamvar et al.   PeerJ

Potential for evolutionary responses to climate change - evidence from tree populations

(2013) Florian J. Alberto et al.   GLOBAL CHANGE BIOLOGY

Phylogeography and polyploid evolution of North American goldenrods (Solidagosubsect.Humiles, Asteraceae)

(2013) Jess A. Peirson et al.   JOURNAL OF BIOGEOGRAPHY

Inferring Phylogenies from RAD Sequence Data

(2012) Benjamin E. R. Rubin et al.   PLoS One

Evolution of leaf form correlates with tropical-temperate transitions in Viburnum (Adoxaceae)

(2012) S. B. Schmerler et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Selecting pseudo-absences for species distribution models: how, where and how many?

(2012) Morgane Barbet-Massin et al.   Methods in Ecology and Evolution

Dissolution of Viburnum Section Megalotinus (Adoxaceae) of Southeast Asia and Its Implications for Morphological Evolution and Biogeography

(2011) Wendy L. Clement et al.   INTERNATIONAL JOURNAL OF PLANT SCIENCES

Comparative phylogeography of red maple (Acer rubrum L.) and silver maple (Acer saccharinum L.): impacts of habitat specialization, hybridization and glacial history

(2011) Ikuyo Saeki et al.   JOURNAL OF BIOGEOGRAPHY

Plant molecular phylogeography in China and adjacent regions: Tracing the genetic imprints of Quaternary climate and environmental change in the world’s most diverse temperate flora

(2011) Ying-Xiong Qiu et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Phylogeographic structure of jack pine (Pinus banksiana ; Pinaceae) supports the existence of a coastal glacial refugium in northeastern North America

(2010) Julie Godbout et al.   AMERICAN JOURNAL OF BOTANY

Discriminant analysis of principal components: a new method for the analysis of genetically structured populations

(2010) Thibaut Jombart et al.   BMC GENETICS

A climatic basis for microrefugia: the influence of terrain on climate

(2010) SOLOMON Z. DOBROWSKI   GLOBAL CHANGE BIOLOGY

Reassessment of phylogeographical structure in an eastern North American tree using Monmonier’s algorithm and ecological niche modelling

(2010) Ashley B. Morris et al.   JOURNAL OF BIOGEOGRAPHY

Of glaciers and refugia: a decade of study sheds new light on the phylogeography of northwestern North America

(2010) AARON B. A. SHAFER et al.   MOLECULAR ECOLOGY

Nuclear and chloroplast DNA phylogeography reveal two refuge areas with asymmetrical gene flow in a temperate walnut tree from East Asia

(2010) Wei-Ning Bai et al.   NEW PHYTOLOGIST

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Inferring the past from the present phylogeographic structure of North American forest trees: seeing the forest for the genes

(2009) Juan P. Jaramillo-Correa et al.   CANADIAN JOURNAL OF FOREST RESEARCH

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

Phylogeographic analyses suggest that a deciduous species (Ostryopsis davidianaDecne., Betulaceae) survived in northern China during the Last Glacial Maximum

(2009) Bin Tian et al.   JOURNAL OF BIOGEOGRAPHY

Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data

(2009) Ryan N. Gutenkunst et al.   PLoS Genetics

Nuclear DNA Microsatellites Reveal Genetic Variation but a Lack of Phylogeographical Structure in an Endangered Species, Fraxinus mandshurica, Across North-east China

(2008) Li-Jiang Hu et al.   ANNALS OF BOTANY

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS

Multilocus Patterns of Nucleotide Polymorphism and the Demographic History of Populus tremula

(2008) P. K. Ingvarsson   GENETICS

Identification of glacial refugia in south-eastern North America by phylogeographical analyses of a forest understorey plant, Trillium cuneatum

(2008) Eva Gonzales et al.   JOURNAL OF BIOGEOGRAPHY

Phylogeographical structure and temporal complexity in American sweetgum (Liquidambar styraciflua; Altingiaceae)

(2008) ASHLEY B. MORRIS et al.   MOLECULAR ECOLOGY

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One