Epigenomick-mer dictionaries: shedding light on how sequence composition influencesin vivonucleosome positioning

iNuc-PseKNC: a sequence-based predictor for predicting nucleosome positioning in genomes with pseudo k-tuple nucleotide composition

(2014) Shou-Hui Guo et al.   BIOINFORMATICS

Training-free atomistic prediction of nucleosome occupancy

(2014) P. Minary et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Applications of alignment-free methods in epigenomics

(2013) L. Pinello et al.   BRIEFINGS IN BIOINFORMATICS

Determinants of nucleosome positioning

(2013) Kevin Struhl et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Poly(dA:dT)-Rich DNAs Are Highly Flexible in the Context of DNA Looping

(2013) Stephanie Johnson et al.   PLoS One

Irredundant tandem motifs

(2013) Laxmi Parida et al.   THEORETICAL COMPUTER SCIENCE

A motif-independent metric for DNA sequence specificity

(2012) Luca Pinello et al.   BMC BIOINFORMATICS

Algorithmic paradigms for stability-based cluster validity and model selection statistical methods, with applications to microarray data analysis

(2012) R. Giancarlo et al.   THEORETICAL COMPUTER SCIENCE

Extracting string motif bases for quorum higher than two

(2012) Simona E. Rombo   THEORETICAL COMPUTER SCIENCE

Linking genome to epigenome

(2012) Guo-Cheng Yuan   Wiley Interdisciplinary Reviews-Systems Biology and Medicine

DNACLUST: accurate and efficient clustering of phylogenetic marker genes

(2011) Mohammadreza Ghodsi et al.   BMC BIOINFORMATICS

Textual data compression in computational biology: a synopsis

(2009) R. Giancarlo et al.   BIOINFORMATICS

G+C content dominates intrinsic nucleosome occupancy

(2009) Desiree Tillo et al.   BMC BIOINFORMATICS

Poly(dA:dT) tracts: major determinants of nucleosome organization

(2009) Eran Segal et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Nucleosome positioning and gene regulation: advances through genomics

(2009) Cizhong Jiang et al.   NATURE REVIEWS GENETICS

A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning

(2008) A. Valouev et al.   GENOME RESEARCH

The DNA-encoded nucleosome organization of a eukaryotic genome

(2008) Noam Kaplan et al.   NATURE