A widespread alternative squalene epoxidase participates in eukaryote steroid biosynthesis

The Ocean Gene Atlas: exploring the biogeography of plankton genes online

(2018) Emilie Villar et al.   NUCLEIC ACIDS RESEARCH

A Reference Viral Database (RVDB) To Enhance Bioinformatics Analysis of High-Throughput Sequencing for Novel Virus Detection

(2018) Norman Goodacre et al.   mSphere

Co-expression of squalene epoxidases with triterpene cyclases boosts production of triterpenoids in plants and yeast

(2018) Lemeng Dong et al.   METABOLIC ENGINEERING

Paleoproterozoic sterol biosynthesis and the rise of oxygen

(2017) David A. Gold et al.   NATURE

ModelFinder: fast model selection for accurate phylogenetic estimates

(2017) Subha Kalyaanamoorthy et al.   NATURE METHODS

Autoinhibitory sterol sulfates mediate programmed cell death in a bloom-forming marine diatom

(2017) Carmela Gallo et al.   Nature Communications

The ancient CYP716 family is a major contributor to the diversification of eudicot triterpenoid biosynthesis

(2017) Karel Miettinen et al.   Nature Communications

Alkaline phosphatase promoter as an efficient driving element for exogenic recombinant in the marine diatom Phaeodactylum tricornutum

(2017) Hung-Yun Lin et al.   Algal Research-Biomass Biofuels and Bioproducts

Environmental Viral Genomes Shed New Light on Virus-Host Interactions in the Ocean

(2017) Yosuke Nishimura et al.   mSphere

De novo assembly and comparative transcriptome analysis of Euglena gracilis in response to anaerobic conditions

(2016) Yuta Yoshida et al.   BMC GENOMICS

Untangling the early diversification of eukaryotes: a phylogenomic study of the evolutionary origins of Centrohelida, Haptophyta and Cryptista

(2016) Fabien Burki et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Linking Virus Genomes with Host Taxonomy

(2016) Tomoko Mihara et al.   Viruses-Basel

Addressing various compartments of the diatom model organism Phaeodactylum tricornutum via sub-cellular marker proteins

(2016) Xiaojuan Liu et al.   Algal Research-Biomass Biofuels and Bioproducts

The Crystal Structure of an Integral Membrane Fatty Acid α-Hydroxylase

(2015) Guangyu Zhu et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Arabidopsis Squalene Epoxidase 3 (SQE3) Complements SQE1 and Is Important for Embryo Development and Bulk Squalene Epoxidase Activity

(2015) Sara Laranjeira et al.   Molecular Plant

X-ray structure of a mammalian stearoyl-CoA desaturase

(2015) Yonghong Bai et al.   NATURE

Structure and function of the global ocean microbiome

(2015) S. Sunagawa et al.   SCIENCE

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Tracking the sterol biosynthesis pathway of the diatomPhaeodactylum tricornutum

(2014) Michele Fabris et al.   NEW PHYTOLOGIST

A New and Improved Host-Independent Plasmid System for RK2-Based Conjugal Transfer

(2014) Trine Aakvik Strand et al.   PLoS One

Combinatorial biosynthesis of sapogenins and saponins in Saccharomyces cerevisiae using a C-16  hydroxylase from Bupleurum falcatum

(2014) T. Moses et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

The protein quality control system manages plant defence compound synthesis

(2013) Jacob Pollier et al.   NATURE

Atmospheric oxygenation three billion years ago

(2013) Sean A. Crowe et al.   NATURE

AUREOCHROME1a-Mediated Induction of the Diatom-Specific CyclindsCYC2Controls the Onset of Cell Division in Diatoms (Phaeodactylum tricornutum)

(2013) Marie J.J. Huysman et al.   PLANT CELL

The Pacific Ocean Virome (POV): A Marine Viral Metagenomic Dataset and Associated Protein Clusters for Quantitative Viral Ecology

(2013) Bonnie L. Hurwitz et al.   PLoS One

TRAPID: an efficient online tool for the functional and comparative analysis of de novo RNA-Seq transcriptomes

(2013) Michiel Van Bel et al.   GENOME BIOLOGY

A novel hybrid gene prediction method employing protein multiple sequence alignments

(2011) Oliver Keller et al.   BIOINFORMATICS

Cholesterol-Dependent Degradation of Squalene Monooxygenase, a Control Point in Cholesterol Synthesis beyond HMG-CoA Reductase

(2011) Saloni Gill et al.   Cell Metabolism

A comprehensive study of sterols in marine diatoms (Bacillariophyta): Implications for their use as tracers for diatom productivity

(2011) Sebastiaan W. Rampen et al.   LIMNOLOGY AND OCEANOGRAPHY

Experimental Examination of EFL and MATX Eukaryotic Horizontal Gene Transfers: Coexistence of Mutually Exclusive Transcripts Predates Functional Rescue

(2011) Jana Szabová et al.   MOLECULAR BIOLOGY AND EVOLUTION

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

Effects of Marine Toxins on the Reproduction and Early Stages Development of Aquatic Organisms

(2010) Vítor Vasconcelos et al.   Marine Drugs

Phylogenetic Distribution of Fungal Sterols

(2010) John D. Weete et al.   PLoS One

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

Phylogenomics of Sterol Synthesis: Insights into the Origin, Evolution, and Diversity of a Key Eukaryotic Feature

(2009) Elie Desmond et al.   Genome Biology and Evolution

Horizontal gene transfer of an entire metabolic pathway between a eukaryotic alga and its DNA virus

(2009) A. Monier et al.   GENOME RESEARCH

Gene silencing in the marine diatom Phaeodactylum tricornutum

(2009) Valentina De Riso et al.   NUCLEIC ACIDS RESEARCH

Neurotoxins from Marine Dinoflagellates: A Brief Review

(2008) Da-Zhi Wang   Marine Drugs