A Reference Viral Database (RVDB) To Enhance Bioinformatics Analysis of High-Throughput Sequencing for Novel Virus Detection

Virus taxonomy in the age of metagenomics

(2017) Peter Simmonds et al.   NATURE REVIEWS MICROBIOLOGY

Virus taxonomy: the database of the International Committee on Taxonomy of Viruses (ICTV)

(2017) Elliot J Lefkowitz et al.   NUCLEIC ACIDS RESEARCH

Rhabdovirus-like endogenous viral elements in the genome of Spodoptera frugiperda insect cells are actively transcribed: Implications for adventitious virus detection

(2016) Christoph Geisler et al.   BIOLOGICALS

gEVE: a genome-based endogenous viral element database provides comprehensive viral protein-coding sequences in mammalian genomes

(2016) So Nakagawa et al.   Database-The Journal of Biological Databases and Curation

DPTEdb, an integrative database of transposable elements in dioecious plants

(2016) Shu-Fen Li et al.   Database-The Journal of Biological Databases and Curation

The Dfam database of repetitive DNA families

(2015) Robert Hubley et al.   NUCLEIC ACIDS RESEARCH

Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation

(2015) Nuala A. O'Leary et al.   NUCLEIC ACIDS RESEARCH

MnTEdb, a collective resource for mulberry transposable elements

(2015) Bi Ma et al.   Database-The Journal of Biological Databases and Curation

Repbase Update, a database of repetitive elements in eukaryotic genomes

(2015) Weidong Bao et al.   Mobile DNA

Unraveling the Web of Viroinformatics: Computational Tools and Databases in Virus Research

(2014) Deepak Sharma et al.   JOURNAL OF VIROLOGY

Identification of a Novel Rhabdovirus in Spodoptera frugiperda Cell Lines

(2014) H. Ma et al.   JOURNAL OF VIROLOGY

NCBI Viral Genomes Resource

(2014) J. Rodney Brister et al.   NUCLEIC ACIDS RESEARCH

GenBank

(2013) Dennis A. Benson et al.   NUCLEIC ACIDS RESEARCH

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

BmTEdb: a collective database of transposable elements in the silkworm genome

(2013) Hong-En Xu et al.   Database-The Journal of Biological Databases and Curation

ERE database: A database of genomic maps and biological properties of endogenous retroviral elements in the C57BL/6J mouse genome

(2012) Damian Kao et al.   GENOMICS

The RCSB Protein Data Bank: new resources for research and education

(2012) Peter W. Rose et al.   NUCLEIC ACIDS RESEARCH

Next generation sequencing and bioinformatic bottlenecks: the current state of metagenomic data analysis

(2011) Matthew B. Scholz et al.   CURRENT OPINION IN BIOTECHNOLOGY

Chemical Induction of Endogenous Retrovirus Particles from the Vero Cell Line of African Green Monkeys

(2011) H. Ma et al.   JOURNAL OF VIROLOGY

The sequence read archive: explosive growth of sequencing data

(2011) Y. Kodama et al.   NUCLEIC ACIDS RESEARCH

The NCBI Taxonomy database

(2011) S. Federhen   NUCLEIC ACIDS RESEARCH

Ensuring the safety of vaccine cell substrates by massively parallel sequencing of the transcriptome

(2011) D. Onions et al.   VACCINE

SoyTEdb: a comprehensive database of transposable elements in the soybean genome

(2010) Jianchang Du et al.   BMC GENOMICS

Viral Nucleic Acids in Live-Attenuated Vaccines: Detection of Minority Variants and an Adventitious Virus

(2010) J. G. Victoria et al.   JOURNAL OF VIROLOGY

The Gypsy Database (GyDB) of mobile genetic elements: release 2.0

(2010) C. Llorens et al.   NUCLEIC ACIDS RESEARCH

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

A universal classification of eukaryotic transposable elements implemented in Repbase

(2008) Vladimir V. Kapitonov et al.   NATURE REVIEWS GENETICS

Diversity of errantivirus (retrovirus) sequences in two cell lines used for baculovirus expression, Spodoptera frugiperda and Trichoplusia ni

(2008) Tila Menzel et al.   VIRUS GENES