Mapping Transgene Insertion Sites Reveals Complex Interactions Between Mouse Transgenes and Neighboring Endogenous Genes

Role for Wnt Signaling in Retinal Neuropil Development: Analysis via RNA-Seq and In Vivo Somatic CRISPR Mutagenesis

(2018) Sumeet Sarin et al.   NEURON

Formation of retinal direction-selective circuitry initiated by starburst amacrine cell homotypic contact

(2018) Thomas A Ray et al.   eLife

Satb1 Regulates Contactin 5 to Pattern Dendrites of a Mammalian Retinal Ganglion Cell

(2017) Yi-Rong Peng et al.   NEURON

“Silent” NMDA Synapses Enhance Motion Sensitivity in a Mature Retinal Circuit

(2017) Santhosh Sethuramanujam et al.   NEURON

Efficient mapping of transgene integration sites and local structural changes in Cre transgenic mice using targeted locus amplification

(2017) Carol Cain-Hom et al.   NUCLEIC ACIDS RESEARCH

STARs in the CNS

(2016) I. Ehrmann et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Comprehensive Classification of Retinal Bipolar Neurons by Single-Cell Transcriptomics

(2016) Karthik Shekhar et al.   CELL

Chromatin Domains: The Unit of Chromosome Organization

(2016) Jesse R. Dixon et al.   MOLECULAR CELL

A Mammalian enhancer trap resource for discovering and manipulating neuronal cell types

(2016) Yasuyuki Shima et al.   eLife

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets

(2015) Evan Z. Macosko et al.   CELL

Structural and functional diversity of Topologically Associating Domains

(2015) Job Dekker et al.   FEBS LETTERS

Sidekick 2 directs formation of a retinal circuit that detects differential motion

(2015) Arjun Krishnaswamy et al.   NATURE

Identification of the Genomic Insertion Site of the Thyroid Peroxidase Promoter–Cre Recombinase Transgene Using a Novel, Efficient, Next-Generation DNA Sequencing Method

(2015) Priyadarshini Raman et al.   THYROID

Discovery of transgene insertion sites by high throughput sequencing of mate pair libraries

(2014) Anuj Srivastava et al.   BMC GENOMICS

Type II Cadherins Guide Assembly of a Direction-Selective Retinal Circuit

(2014) Xin Duan et al.   CELL

Functional and topological characteristics of mammalian regulatory domains

(2014) O. Symmons et al.   GENOME RESEARCH

Neuronal cell type–specific alternative splicing is regulated by the KH domain protein SLM1

(2014) Takatoshi Iijima et al.   JOURNAL OF CELL BIOLOGY

Alternative Splicing Coupled Nonsense-Mediated Decay Generates Neuronal Cell Type-Specific Expression of SLM Proteins

(2014) L. Traunmuller et al.   JOURNAL OF NEUROSCIENCE

Targeted sequencing by proximity ligation for comprehensive variant detection and local haplotyping

(2014) Paula J P de Vree et al.   NATURE BIOTECHNOLOGY

The RNA binding protein RBPMS is a selective marker of ganglion cells in the mammalian retina

(2013) Allen R. Rodriguez et al.   JOURNAL OF COMPARATIVE NEUROLOGY

Genetic Dissection of Retinal Inputs to Brainstem Nuclei Controlling Image Stabilization

(2013) O. S. Dhande et al.   JOURNAL OF NEUROSCIENCE

Use of microarray hybrid capture and next-generation sequencing to identify the anatomy of a transgene

(2013) Amanda J. DuBose et al.   NUCLEIC ACIDS RESEARCH

Integration of H-2Z1, a Somatosensory Cortex-Expressed Transgene, Interferes with the Expression of the Satb1 and Tbc1d5 Flanking Genes and Affects the Differentiation of a Subset of Cortical Interneurons

(2012) N. Narboux-Neme et al.   JOURNAL OF NEUROSCIENCE

MEGF10 and MEGF11 mediate homotypic interactions required for mosaic spacing of retinal neurons

(2012) Jeremy N. Kay et al.   NATURE

The most numerous ganglion cell type of the mouse retina is a selective feature detector

(2012) Y. Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Retinal Ganglion Cells with Distinct Directional Preferences Differ in Molecular Identity, Structure, and Central Projections

(2011) J. N. Kay et al.   JOURNAL OF NEUROSCIENCE

Neurod6 expression defines new retinal amacrine cell subtypes and regulates their fate

(2011) Jeremy N Kay et al.   NATURE NEUROSCIENCE

Parallel Mechanisms Encode Direction in the Retina

(2011) Stuart Trenholm et al.   NEURON

Laminar Restriction of Retinal Ganglion Cell Dendrites and Axons: Subtype-Specific Developmental Patterns Revealed with Transgenic Markers

(2010) I.-J. Kim et al.   JOURNAL OF NEUROSCIENCE

Genetic Identification of an On-Off Direction- Selective Retinal Ganglion Cell Subtype Reveals a Layer-Specific Subcortical Map of Posterior Motion

(2009) Andrew D. Huberman et al.   NEURON

Expression analysis of green fluorescent protein in retinal neurons of four transgenic mouse lines

(2009) S. Haverkamp et al.   NEUROSCIENCE

Development of Presynaptic Inhibition Onto Retinal Bipolar Cell Axon Terminals Is Subclass-Specific

(2008) Timm Schubert et al.   JOURNAL OF NEUROPHYSIOLOGY

Loss of Fat4 disrupts PCP signaling and oriented cell division and leads to cystic kidney disease

(2008) Sakura Saburi et al.   NATURE GENETICS

Single-neuron labeling with inducible Cre-mediated knockout in transgenic mice

(2008) Paul Young et al.   NATURE NEUROSCIENCE

Position effect variegation and imprinting of transgenes in lymphocytes

(2008) A. Williams et al.   NUCLEIC ACIDS RESEARCH

Identifying and genotyping transgene integration loci

(2008) Zhong Liang et al.   TRANSGENIC RESEARCH