标题
Programming Bacteria With Light—Sensors and Applications in Synthetic Biology
作者
关键词
-
出版物
Frontiers in Microbiology
Volume 9, Issue -, Pages -
出版商
Frontiers Media SA
发表日期
2018-11-08
DOI
10.3389/fmicb.2018.02692
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Optogenetic Control by Pulsed Illumination
- (2018) Julia Hennemann et al. CHEMBIOCHEM
- Near-Infrared Light-Controlled Gene Expression and Protein Targeting in Neurons and Non-neuronal Cells
- (2018) Taras A. Redchuk et al. CHEMBIOCHEM
- A Miniaturized Escherichia coli Green Light Sensor with High Dynamic Range
- (2018) Nicholas T. Ong et al. CHEMBIOCHEM
- Optogenetic regulation of engineered cellular metabolism for microbial chemical production
- (2018) Evan M. Zhao et al. NATURE
- Near-infrared light–controlled systems for gene transcription regulation, protein targeting and spectral multiplexing
- (2018) Taras A Redchuk et al. Nature Protocols
- A novel optogenetically tunable frequency modulating oscillator
- (2018) Tarun Mahajan et al. PLoS One
- Light-activated protein interaction with high spatial subcellular confinement
- (2018) Lorena Benedetti et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Biofilm Lithography enables high-resolution cell patterning via optogenetic adhesin expression
- (2018) Xiaofan Jin et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Near-infrared deep brain stimulation via upconversion nanoparticle–mediated optogenetics
- (2018) Shuo Chen et al. SCIENCE
- Cell-Free Optogenetic Gene Expression System
- (2018) Premkumar Jayaraman et al. ACS Synthetic Biology
- Bioprinting Living Biofilms through Optogenetic Manipulation
- (2018) Yajia Huang et al. ACS Synthetic Biology
- Engineering RGB color vision into Escherichia coli
- (2017) Jesus Fernandez-Rodriguez et al. Nature Chemical Biology
- Near-infrared optogenetic pair for protein regulation and spectral multiplexing
- (2017) Taras A Redchuk et al. Nature Chemical Biology
- CRISPR–Cas9-based photoactivatable transcription systems to induce neuronal differentiation
- (2017) Yuta Nihongaki et al. NATURE METHODS
- Optogenetic Tools for Subcellular Applications in Neuroscience
- (2017) Benjamin R. Rost et al. NEURON
- B12-dependent photoresponsive protein hydrogels for controlled stem cell/protein release
- (2017) Ri Wang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- At Light Speed: Advances in Optogenetic Systems for Regulating Cell Signaling and Behavior
- (2017) Nicole A. Repina et al. Annual Review of Chemical and Biomolecular Engineering
- Light controlled 3D micromotors powered by bacteria
- (2017) Gaszton Vizsnyiczai et al. Nature Communications
- Engineering an E. coli Near-Infrared Light Sensor
- (2017) Nicholas T. Ong et al. ACS Synthetic Biology
- Optogenetics Manipulation Enables Prevention of Biofilm Formation of Engineered Pseudomonas aeruginosa on Surfaces
- (2017) Lu Pu et al. ACS Synthetic Biology
- Dynamic Blue Light-Inducible T7 RNA Polymerases (Opto-T7RNAPs) for Precise Spatiotemporal Gene Expression Control
- (2017) Armin Baumschlager et al. ACS Synthetic Biology
- Assembly Domain-Based Optogenetic System for the Efficient Control of Cellular Signaling
- (2017) Akihiro Furuya et al. ACS Synthetic Biology
- Optogenetic Control of Endoplasmic Reticulum–Mitochondria Tethering
- (2017) Fan Shi et al. ACS Synthetic Biology
- Blue Light Switchable Bacterial Adhesion as a Key Step toward the Design of Biofilms
- (2017) Fei Chen et al. ACS Synthetic Biology
- Biophotography: concepts, applications and perspectives
- (2016) Christian Renicke et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- Go in! Go out! Inducible control of nuclear localization
- (2016) Barbara Di Ventura et al. CURRENT OPINION IN CHEMICAL BIOLOGY
- Development of a light-regulated cell-recovery system for non-photosynthetic bacteria
- (2016) Mitsuharu Nakajima et al. Microbial Cell Factories
- Light-induced nuclear export reveals rapid dynamics of epigenetic modifications
- (2016) Hayretin Yumerefendi et al. Nature Chemical Biology
- A bacterial phytochrome-based optogenetic system controllable with near-infrared light
- (2016) Andrii A Kaberniuk et al. NATURE METHODS
- Blue light-mediated transcriptional activation and repression of gene expression in bacteria
- (2016) Premkumar Jayaraman et al. NUCLEIC ACIDS RESEARCH
- Engineering Synthetic Gene Circuits in Living Cells with CRISPR Technology
- (2016) Barbara Jusiak et al. TRENDS IN BIOTECHNOLOGY
- Automated optogenetic feedback control for precise and robust regulation of gene expression and cell growth
- (2016) Andreas Milias-Argeitis et al. Nature Communications
- Phototaxis of synthetic microswimmers in optical landscapes
- (2016) Celia Lozano et al. Nature Communications
- Rewiring Multidomain Protein Switches: Transforming a Fluorescent Zn2+ Sensor into a Light-Responsive Zn2+ Binding Protein
- (2016) Stijn J.A. Aper et al. ACS Synthetic Biology
- Engineered Photoactivatable Genetic Switches Based on the Bacterium Phage T7 RNA Polymerase
- (2016) Tiyun Han et al. ACS Synthetic Biology
- Repurposing Synechocystis PCC6803 UirS–UirR as a UV-Violet/Green Photoreversible Transcriptional Regulatory Tool in E. coli
- (2016) Prabha Ramakrishnan et al. ACS Synthetic Biology
- Optical manipulation of the alpha subunits of heterotrimeric G proteins using photoswitchable dimerization systems
- (2016) Gaigai Yu et al. Scientific Reports
- An open-hardware platform for optogenetics and photobiology
- (2016) Karl P. Gerhardt et al. Scientific Reports
- Natural photoreceptors and their application to synthetic biology
- (2015) Daniel Schmidt et al. TRENDS IN BIOTECHNOLOGY
- Engineered pairs of distinct photoswitches for optogenetic control of cellular proteins
- (2015) Fuun Kawano et al. Nature Communications
- A green-light inducible lytic system for cyanobacterial cells
- (2014) Kotone Miyake et al. Biotechnology for Biofuels
- Photo-sensitive degron variants for tuning protein stability by light
- (2014) Svetlana Usherenko et al. BMC Systems Biology
- Integrating Biological Redesign: Where Synthetic Biology Came From and Where It Needs to Go
- (2014) Jeffrey C. Way et al. CELL
- Optogenetic approaches to cell migration and beyond
- (2014) Matthew Weitzman et al. CURRENT OPINION IN CELL BIOLOGY
- Spatio-temporally precise activation of engineered receptor tyrosine kinases by light
- (2014) M. Grusch et al. EMBO JOURNAL
- Real-time optogenetic control of intracellular protein concentration in microbial cell cultures
- (2014) Justin Melendez et al. Integrative Biology
- Multi-input CRISPR/Cas genetic circuits that interface host regulatory networks
- (2014) A. A. Nielsen et al. Molecular Systems Biology
- Tunable protein degradation in bacteria
- (2014) D Ewen Cameron et al. NATURE BIOTECHNOLOGY
- Optogenetic characterization methods overcome key challenges in synthetic and systems biology
- (2014) Evan J Olson et al. Nature Chemical Biology
- An optogenetic gene expression system with rapid activation and deactivation kinetics
- (2014) Laura B Motta-Mena et al. Nature Chemical Biology
- Characterizing bacterial gene circuit dynamics with optically programmed gene expression signals
- (2014) Evan J Olson et al. NATURE METHODS
- Phytochromes: An Atomic Perspective on Photoactivation and Signaling
- (2014) E. Sethe Burgie et al. PLANT CELL
- Engineering adenylate cyclases regulated by near-infrared window light
- (2014) M.-H. Ryu et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Genomically encoded analog memory with precise in vivo DNA writing in living cell populations
- (2014) F. Farzadfard et al. SCIENCE
- Refactoring and Optimization of Light-Switchable Escherichia coli Two-Component Systems
- (2014) Sebastian R. Schmidl et al. ACS Synthetic Biology
- Near-infrared Light Responsive Synthetic c-di-GMP Module for Optogenetic Applications
- (2014) Min-Hyung Ryu et al. ACS Synthetic Biology
- Blue Light-Induced Dimerization of a Bacterial LOV–HTH DNA-Binding Protein
- (2013) Brian D. Zoltowski et al. BIOCHEMISTRY
- Repurposing CRISPR as an RNA-Guided Platform for Sequence-Specific Control of Gene Expression
- (2013) Lei S. Qi et al. CELL
- A LOV2 Domain-Based Optogenetic Tool to Control Protein Degradation and Cellular Function
- (2013) Christian Renicke et al. CHEMISTRY & BIOLOGY
- Advances in genetic circuit design: novel biochemistries, deep part mining, and precision gene expression
- (2013) Alec AK Nielsen et al. CURRENT OPINION IN CHEMICAL BIOLOGY
- A light-inducible organelle-targeting system for dynamically activating and inactivating signaling in budding yeast
- (2013) Xiaojing Yang et al. MOLECULAR BIOLOGY OF THE CELL
- Optogenetic tools for mammalian systems
- (2013) Konrad Müller et al. Molecular BioSystems
- Triggering sporulation inBacillus subtiliswith artificial two-component systems reveals the importance of proper Spo0A activation dynamics
- (2013) Monika Vishnoi et al. MOLECULAR MICROBIOLOGY
- Programmable repression and activation of bacterial gene expression using an engineered CRISPR-Cas system
- (2013) David Bikard et al. NUCLEIC ACIDS RESEARCH
- Multi-chromatic control of mammalian gene expression and signaling
- (2013) Konrad Müller et al. NUCLEIC ACIDS RESEARCH
- Switchable Gene Expression in Escherichia coli Using a Miniaturized Photobioreactor
- (2013) Jae Myung Lee et al. PLoS One
- Rate of environmental change determines stress response specificity
- (2013) J. W. Young et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Engineering Escherichia coli for Light-Activated Cytolysis of Mammalian Cells
- (2013) Michael S. Magaraci et al. ACS Synthetic Biology
- Engineering of a green-light inducible gene expression system inSynechocystissp. PCC6803
- (2013) Koichi Abe et al. Microbial Biotechnology
- Identification of Natural and Artificial DNA Substrates for Light-Activated LOV–HTH Transcription Factor EL222
- (2012) Giomar Rivera-Cancel et al. BIOCHEMISTRY
- Light-controlled synthetic gene circuits
- (2012) Laura Gardner et al. CURRENT OPINION IN CHEMICAL BIOLOGY
- From Dusk till Dawn: One-Plasmid Systems for Light-Regulated Gene Expression
- (2012) Robert Ohlendorf et al. JOURNAL OF MOLECULAR BIOLOGY
- Spatiotemporal control of gene expression by a light-switchable transgene system
- (2012) Xue Wang et al. NATURE METHODS
- Refactoring the nitrogen fixation gene cluster from Klebsiella oxytoca
- (2012) K. Temme et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Optical Control of Protein Activity by Fluorescent Protein Domains
- (2012) X. X. Zhou et al. SCIENCE
- Pulsed Feedback Defers Cellular Differentiation
- (2012) Joe H. Levine et al. PLOS BIOLOGY
- Lights on and action! Controlling microbial gene expression by light
- (2011) Thomas Drepper et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- Genetically engineered light sensors for control of bacterial gene expression
- (2011) Daniel Camsund et al. Biotechnology Journal
- The use of light for engineered control and reprogramming of cellular functions
- (2011) William Bacchus et al. CURRENT OPINION IN BIOTECHNOLOGY
- Temporal competition between differentiation programs determines cell fate choice
- (2011) A. Kuchina et al. Molecular Systems Biology
- In silico feedback for in vivo regulation of a gene expression circuit
- (2011) Andreas Milias-Argeitis et al. NATURE BIOTECHNOLOGY
- Light-based feedback for controlling intracellular signaling dynamics
- (2011) Jared E Toettcher et al. NATURE METHODS
- Non-transcriptional regulatory processes shape transcriptional network dynamics
- (2011) J. Christian J. Ray et al. NATURE REVIEWS MICROBIOLOGY
- Function, structure and mechanism of bacterial photosensory LOV proteins
- (2011) Julien Herrou et al. NATURE REVIEWS MICROBIOLOGY
- Structural basis of photosensitivity in a bacterial light-oxygen-voltage/helix-turn-helix (LOV-HTH) DNA-binding protein
- (2011) A. I. Nash et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Near-UV cyanobacteriochrome signaling system elicits negative phototaxis in the cyanobacterium Synechocystis sp. PCC 6803
- (2011) J.-Y. Song et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A Brief History of Phytochromes
- (2010) Nathan C. Rockwell et al. CHEMPHYSCHEM
- Multichromatic Control of Gene Expression in Escherichia coli
- (2010) Jeffrey J. Tabor et al. JOURNAL OF MOLECULAR BIOLOGY
- A modular gradient-sensing network for chemotaxis in Escherichia coli revealed by responses to time-varying stimuli
- (2010) Thomas S Shimizu et al. Molecular Systems Biology
- Synthetic biology: applications come of age
- (2010) Ahmad S. Khalil et al. NATURE REVIEWS GENETICS
- A Systems-Level Analysis of Perfect Adaptation in Yeast Osmoregulation
- (2009) Dale Muzzey et al. CELL
- A Synthetic Genetic Edge Detection Program
- (2009) Jeffrey J. Tabor et al. CELL
- In VivoMutational Analysis of YtvA fromBacillus subtilis
- (2009) Marcela Avila-Pérez et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Spatiotemporal control of cell signalling using a light-switchable protein interaction
- (2009) Anselm Levskaya et al. NATURE
- A genetically encoded photoactivatable Rac controls the motility of living cells
- (2009) Yi I. Wu et al. NATURE
- Mechanism-based tuning of a LOV domain photoreceptor
- (2009) Brian D Zoltowski et al. Nature Chemical Biology
- Light Activation of the LOV Protein Vivid Generates a Rapidly Exchanging Dimer†‡
- (2008) Brian D. Zoltowski et al. BIOCHEMISTRY
- Photoregulation in prokaryotes
- (2008) Erin B Purcell et al. CURRENT OPINION IN MICROBIOLOGY
- Design and Signaling Mechanism of Light-Regulated Histidine Kinases
- (2008) Andreas Möglich et al. JOURNAL OF MOLECULAR BIOLOGY
- Bacterial bilin- and flavin-binding photoreceptors
- (2008) A. Losi et al. PHOTOCHEMICAL & PHOTOBIOLOGICAL SCIENCES
- Cyanobacteriochrome CcaS is the green light receptor that induces the expression of phycobilisome linker protein
- (2008) Y. Hirose et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Frequency Dependence of Osmo-Adaptation in Saccharomyces cerevisiae
- (2008) J. T. Mettetal et al. SCIENCE
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started