标题
CaImAn an open source tool for scalable calcium imaging data analysis
作者
关键词
-
出版物
eLife
Volume 8, Issue -, Pages -
出版商
eLife Sciences Publications, Ltd
发表日期
2019-01-14
DOI
10.7554/elife.38173
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Analysis pipelines for calcium imaging data
- (2019) Eftychios A Pnevmatikakis CURRENT OPINION IN NEUROBIOLOGY
- A robotic multidimensional directed evolution approach applied to fluorescent voltage reporters
- (2018) Kiryl D. Piatkevich et al. Nature Chemical Biology
- Efficient and accurate extraction of in vivo calcium signals from microendoscopic video data
- (2018) Pengcheng Zhou et al. eLife
- NoRMCorre: An online algorithm for piecewise rigid motion correction of calcium imaging data
- (2017) Eftychios A. Pnevmatikakis et al. JOURNAL OF NEUROSCIENCE METHODS
- Tracking the Same Neurons across Multiple Days in Ca 2+ Imaging Data
- (2017) Liron Sheintuch et al. Cell Reports
- Multi-scale approaches for high-speed imaging and analysis of large neural populations
- (2017) Johannes Friedrich et al. PLoS Computational Biology
- Fast online deconvolution of calcium imaging data
- (2017) Johannes Friedrich et al. PLoS Computational Biology
- The Serotonergic System Tracks the Outcomes of Actions to Mediate Short-Term Motor Learning
- (2016) Takashi Kawashima et al. CELL
- Resolution of High-Frequency Mesoscale Intracortical Maps Using the Genetically Encoded Glutamate Sensor iGluSnFR
- (2016) Y. Xie et al. JOURNAL OF NEUROSCIENCE
- A shared neural ensemble links distinct contextual memories encoded close in time
- (2016) Denise J. Cai et al. NATURE
- Benchmarking Spike Rate Inference in Population Calcium Imaging
- (2016) Lucas Theis et al. NEURON
- Simultaneous Denoising, Deconvolution, and Demixing of Calcium Imaging Data
- (2016) Eftychios A. Pnevmatikakis et al. NEURON
- Accurate spike estimation from noisy calcium signals for ultrafast three-dimensional imaging of large neuronal populations in vivo
- (2016) Thomas Deneux et al. Nature Communications
- A large field of view two-photon mesoscope with subcellular resolution for in vivo imaging
- (2016) Nicholas James Sofroniew et al. eLife
- Swept confocally-aligned planar excitation (SCAPE) microscopy for high-speed volumetric imaging of behaving organisms
- (2015) Matthew B. Bouchard et al. Nature Photonics
- Mapping brain activity at scale with cluster computing
- (2014) Jeremy Freeman et al. NATURE METHODS
- Simultaneous all-optical manipulation and recording of neural circuit activity with cellular resolution in vivo
- (2014) Adam M Packer et al. NATURE METHODS
- Simultaneous whole-animal 3D imaging of neuronal activity using light-field microscopy
- (2014) Robert Prevedel et al. NATURE METHODS
- SIMA: Python software for analysis of dynamic fluorescence imaging data
- (2014) Patrick Kaifosh et al. Frontiers in Neuroinformatics
- scikit-image: image processing in Python
- (2014) Stéfan van der Walt et al. PeerJ
- Ultrasensitive fluorescent proteins for imaging neuronal activity
- (2013) Tsai-Wen Chen et al. NATURE
- Whole-brain functional imaging at cellular resolution using light-sheet microscopy
- (2013) Misha B Ahrens et al. NATURE METHODS
- Kernel density estimation via diffusion
- (2010) Z. I. Botev et al. ANNALS OF STATISTICS
- Automatic Identification of Fluorescently Labeled Brain Cells for Rapid Functional Imaging
- (2010) Ilya Valmianski et al. JOURNAL OF NEUROPHYSIOLOGY
- Fast Nonnegative Deconvolution for Spike Train Inference From Population Calcium Imaging
- (2010) Joshua T. Vogelstein et al. JOURNAL OF NEUROPHYSIOLOGY
- Parallel processing of visual space by neighboring neurons in mouse visual cortex
- (2010) Spencer L Smith et al. NATURE NEUROSCIENCE
- In vivo two-photon imaging of sensory-evoked dendritic calcium signals in cortical neurons
- (2010) Hongbo Jia et al. Nature Protocols
- Automated Analysis of Cellular Signals from Large-Scale Calcium Imaging Data
- (2009) Eran A. Mukamel et al. NEURON
- MapReduce
- (2008) Jeffrey Dean et al. COMMUNICATIONS OF THE ACM
- High-speed, miniaturized fluorescence microscopy in freely moving mice
- (2008) Benjamin A Flusberg et al. NATURE METHODS
Create your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create NowBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started