Efficient and accurate extraction of in vivo calcium signals from microendoscopic video data

Anxiety Cells in a Hippocampal-Hypothalamic Circuit

(2018) Jessica C. Jimenez et al.   NEURON

Identification of a motor-to-auditory pathway important for vocal learning

(2017) Todd F Roberts et al.   NATURE NEUROSCIENCE

The central amygdala controls learning in the lateral amygdala

(2017) Kai Yu et al.   NATURE NEUROSCIENCE

Oxytocin-receptor-expressing neurons in the parabrachial nucleus regulate fluid intake

(2017) Philip J. Ryan et al.   NATURE NEUROSCIENCE

The Spatiotemporal Organization of the Striatum Encodes Action Space

(2017) Andreas Klaus et al.   NEURON

Tracking the Same Neurons across Multiple Days in Ca 2+ Imaging Data

(2017) Liron Sheintuch et al.   Cell Reports

Multi-scale approaches for high-speed imaging and analysis of large neural populations

(2017) Johannes Friedrich et al.   PLoS Computational Biology

Fast online deconvolution of calcium imaging data

(2017) Johannes Friedrich et al.   PLoS Computational Biology

Decreasing Striatopallidal Pathway Function Enhances Motivation by Energizing the Initiation of Goal-Directed Action

(2016) Fernanda Carvalho Poyraz et al.   JOURNAL OF NEUROSCIENCE

A shared neural ensemble links distinct contextual memories encoded close in time

(2016) Denise J. Cai et al.   NATURE

Visualization of cortical, subcortical and deep brain neural circuit dynamics during naturalistic mammalian behavior with head-mounted microscopes and chronically implanted lenses

(2016) Shanna L Resendez et al.   Nature Protocols

Spatially Compact Neural Clusters in the Dorsal Striatum Encode Locomotion Relevant Information

(2016) Giovanni Barbera et al.   NEURON

Simultaneous Denoising, Deconvolution, and Demixing of Calcium Imaging Data

(2016) Eftychios A. Pnevmatikakis et al.   NEURON

Calcium Imaging of Basal Forebrain Activity during Innate and Learned Behaviors

(2016) Thomas C. Harrison et al.   Frontiers in Neural Circuits

Accurate spike estimation from noisy calcium signals for ultrafast three-dimensional imaging of large neuronal populations in vivo

(2016) Thomas Deneux et al.   Nature Communications

Calcium imaging of sleep–wake related neuronal activity in the dorsal pons

(2016) Julia Cox et al.   Nature Communications

An integrative approach for analyzing hundreds of neurons in task performing mice using wide-field calcium imaging

(2016) Ali I. Mohammed et al.   Scientific Reports

Visualizing Hypothalamic Network Dynamics for Appetitive and Consummatory Behaviors

(2015) Joshua H. Jennings et al.   CELL

Miniature microscopes for large-scale imaging of neuronal activity in freely behaving rodents

(2015) Yaniv Ziv et al.   CURRENT OPINION IN NEUROBIOLOGY

Cell-Type-Specific Activity in Prefrontal Cortex during Goal-Directed Behavior

(2015) Lucas Pinto et al.   NEURON

Entorhinal Cortical Ocean Cells Encode Specific Contexts and Drive Context-Specific Fear Memory

(2015) Takashi Kitamura et al.   NEURON

Distinct speed dependence of entorhinal island and ocean cells, including respective grid cells

(2015) Chen Sun et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mesoscopic Patterns of Neural Activity Support Songbird Cortical Sequences

(2015) Jeffrey E. Markowitz et al.   PLOS BIOLOGY

Hippocampal ensemble dynamics timestamp events in long-term memory

(2015) Alon Rubin et al.   eLife

Distinct extended amygdala circuits for divergent motivational states

(2013) Joshua H. Jennings et al.   NATURE

Long-term dynamics of CA1 hippocampal place codes

(2013) Yaniv Ziv et al.   NATURE NEUROSCIENCE

Emergence of Patterned Activity in the Developing Zebrafish Spinal Cord

(2011) Erica Warp et al.   CURRENT BIOLOGY

Miniaturized integration of a fluorescence microscope

(2011) Kunal K Ghosh et al.   NATURE METHODS

Fast Nonnegative Deconvolution for Spike Train Inference From Population Calcium Imaging

(2010) Joshua T. Vogelstein et al.   JOURNAL OF NEUROPHYSIOLOGY

Parallel processing of visual space by neighboring neurons in mouse visual cortex

(2010) Spencer L Smith et al.   NATURE NEUROSCIENCE

Spike Inference from Calcium Imaging Using Sequential Monte Carlo Methods

(2009) Joshua T. Vogelstein et al.   BIOPHYSICAL JOURNAL

Fast Local Algorithms for Large Scale Nonnegative Matrix and Tensor Factorizations

(2009) Andrzej CICHOCKI et al.   IEICE TRANSACTIONS ON FUNDAMENTALS OF ELECTRONICS COMMUNICATIONS AND COMPUT

Functional Clustering of Neurons in Motor Cortex Determined by Cellular Resolution Imaging in Awake Behaving Mice

(2009) D. A. Dombeck et al.   JOURNAL OF NEUROSCIENCE

Automated Analysis of Cellular Signals from Large-Scale Calcium Imaging Data

(2009) Eran A. Mukamel et al.   NEURON

High-speed, miniaturized fluorescence microscopy in freely moving mice

(2008) Benjamin A Flusberg et al.   NATURE METHODS