Noncanonical features and modifications on the 5′-end of bacterial sRNAs and mRNAs

Cooperativity between different tRNA modifications and their modification pathways

(2018) Mikołaj Sokołowski et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

CapZyme-Seq Comprehensively Defines Promoter-Sequence Determinants for RNA 5′ Capping with NAD +

(2018) Irina O. Vvedenskaya et al.   MOLECULAR CELL

Bacterial RNA Biology on a Genome Scale

(2018) Jens Hör et al.   MOLECULAR CELL

Structural and kinetic insights into stimulation of RppH-dependent RNA degradation by the metabolic enzyme DapF

(2018) Ang Gao et al.   NUCLEIC ACIDS RESEARCH

DapF stabilizes the substrate-favoring conformation of RppH to stimulate its RNA-pyrophosphohydrolase activity in Escherichia coli

(2018) Qiang Wang et al.   NUCLEIC ACIDS RESEARCH

In Vivo Cleavage Map Illuminates the Central Role of RNase E in Coding and Non-coding RNA Pathways

(2017) Yanjie Chao et al.   MOLECULAR CELL

A Novel RNA Phosphorylation State Enables 5′ End-Dependent Degradation in Escherichia coli

(2017) Daniel J. Luciano et al.   MOLECULAR CELL

Bacterial RNA polymerase caps RNA with various cofactors and cell wall precursors

(2017) Christina Julius et al.   NUCLEIC ACIDS RESEARCH

Structural basis of prokaryotic NAD-RNA decapping by NudC

(2016) Delin Zhang et al.   CELL RESEARCH

Emerging roles of RNA modifications in bacteria

(2016) Carmelita Nora Marbaniang et al.   CURRENT OPINION IN MICROBIOLOGY

The mechanism of RNA 5′ capping with NAD+, NADH and desphospho-CoA

(2016) Jeremy G. Bird et al.   NATURE

Structure and function of the bacterial decapping enzyme NudC

(2016) Katharina Höfer et al.   Nature Chemical Biology

Alternative polyadenylation of mRNA precursors

(2016) Bin Tian et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

mRNA capping: biological functions and applications

(2016) Anand Ramanathan et al.   NUCLEIC ACIDS RESEARCH

m6A: Signaling for mRNA splicing

(2016) Samir Adhikari et al.   RNA Biology

Structures of RNA Complexes with theEscherichia coliRNA Pyrophosphohydrolase RppH Unveil the Basis for Specific 5′-End-dependent mRNA Decay

(2015) Nikita Vasilyev et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Specificity and Evolutionary Conservation of theEscherichia coliRNA Pyrophosphohydrolase RppH

(2015) Patricia L. Foley et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Leaderless Transcripts and Small Proteins Are Common Features of the Mycobacterial Translational Landscape

(2015) Scarlet S. Shell et al.   PLoS Genetics

Nuclear Export of Messenger RNA

(2015) Jun Katahira   Genes

The Pivotal Regulatory Landscape of RNA Modifications

(2014) Sheng Li et al.   Annual Review of Genomics and Human Genetics

Dynamic RNA Modifications in Posttranscriptional Regulation

(2014) Xiao Wang et al.   MOLECULAR CELL

NAD captureSeq indicates NAD as a bacterial cap for a subset of regulatory RNAs

(2014) Hana Cahová et al.   NATURE

RppH-dependent pyrophosphohydrolysis of mRNAs is regulated by direct interaction with DapF in Escherichia coli

(2014) Chang-Ro Lee et al.   NUCLEIC ACIDS RESEARCH

Bacterial group I introns: mobile RNA catalysts

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Specificity of RppH-dependent RNA degradation in Bacillus subtilis

(2013) P.-k. Hsieh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bacillus subtilis RNA deprotection enzyme RppH recognizes guanosine in the second position of its substrates

(2013) J. Piton et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Alternative cleavage and polyadenylation: the long and short of it

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The role of mammalian poly(A)-binding proteins in co-ordinating mRNA turnover

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Differential Control of the Rate of 5'-End-Dependent mRNA Degradation in Escherichia coli

(2012) D. J. Luciano et al.   JOURNAL OF BACTERIOLOGY

Comparative transcriptomics of pathogenic and non-pathogenic Listeria species

(2012) Omri Wurtzel et al.   Molecular Systems Biology

A 5'-terminal phosphate is required for stable ternary complex formation and translation of leaderless mRNA in Escherichia coli

(2012) J. Giliberti et al.   RNA

Comparative Analysis of Regulatory Elements between Escherichia coli and Klebsiella pneumoniae by Genome-Wide Transcription Start Site Profiling

(2012) Donghyuk Kim et al.   PLoS Genetics

Leaderless genes in bacteria: clue to the evolution of translation initiation mechanisms in prokaryotes

(2011) Xiaobin Zheng et al.   BMC GENOMICS

An RNA Pyrophosphohydrolase Triggers 5′-Exonucleolytic Degradation of mRNA in Bacillus subtilis

(2011) Jamie Richards et al.   MOLECULAR CELL

RNA nucleotide methylation

(2011) Yuri Motorin et al.   Wiley Interdisciplinary Reviews-RNA

Proximity of the Start Codon to a Leaderless mRNA's 5' Terminus Is a Strong Positive Determinant of Ribosome Binding and Expression in Escherichia coli

(2010) K. M. Krishnan et al.   JOURNAL OF BACTERIOLOGY

The primary transcriptome of the major human pathogen Helicobacter pylori

(2010) Cynthia M. Sharma et al.   NATURE

All things must pass: contrasts and commonalities in eukaryotic and bacterial mRNA decay

(2010) Joel G. Belasco   NATURE REVIEWS MOLECULAR CELL BIOLOGY

An Allosteric Self-Splicing Ribozyme Triggered by a Bacterial Second Messenger

(2010) E. R. Lee et al.   SCIENCE

Bacterial/archaeal/organellar polyadenylation

(2010) Bijoy K. Mohanty et al.   Wiley Interdisciplinary Reviews-RNA

Cap and cap-binding proteins in the control of gene expression

(2010) Ivan Topisirovic et al.   Wiley Interdisciplinary Reviews-RNA

Enzymology of RNA cap synthesis

(2010) Agnidipta Ghosh et al.   Wiley Interdisciplinary Reviews-RNA

1H, 13C and 15N resonance assignments of RNA pyrophosphohydrolase RppH from Escherichia coli

(2009) Yunchen Bi et al.   Biomolecular NMR Assignments

Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli

(2009) Bryson D Bennett et al.   Nature Chemical Biology

LC/MS analysis of cellular RNA reveals NAD-linked RNA

(2009) Y Grace Chen et al.   Nature Chemical Biology

A chemical screen for biological small molecule-RNA conjugates reveals CoA-linked RNA

(2009) W. E. Kowtoniuk et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The bacterial enzyme RppH triggers messenger RNA degradation by 5′ pyrophosphate removal

(2008) Atilio Deana et al.   NATURE