Cross-resistance is modular in bacteria–phage interactions

lmerTest Package: Tests in Linear Mixed Effects Models

(2017) Alexandra Kuznetsova et al.   Journal of Statistical Software

A cocktail of three virulent bacteriophages prevents Vibrio cholerae infection in animal models

(2017) Minmin Yen et al.   Nature Communications

Species-rich networks and eco-evolutionary synthesis at the metacommunity level

(2017) Hirokazu Toju et al.   Nature Ecology & Evolution

Targeting the alternative sigma factor RpoN to combat virulence in Pseudomonas aeruginosa

(2017) Megan G. Lloyd et al.   Scientific Reports

Parasite diversity drives rapid host dynamics and evolution of resistance in a bacteria-phage system

(2016) Alex Betts et al.   EVOLUTION

Host and Parasite Evolution in a Tangled Bank

(2016) Alex Betts et al.   TRENDS IN PARASITOLOGY

Parasite Exposure Drives Selective Evolution of Constitutive versus Inducible Defense

(2015) Edze R. Westra et al.   CURRENT BIOLOGY

Pre-adapting parasitic phages to a pathogen leads to increased pathogen clearance and lowered resistance evolution withPseudomonas aeruginosacystic fibrosis bacterial isolates

(2015) V-P. Friman et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Coevolution with Bacteriophages Drives Genome-Wide Host Evolution and Constrains the Acquisition of Abiotic-Beneficial Mutations

(2015) Pauline D. Scanlan et al.   MOLECULAR BIOLOGY AND EVOLUTION

Type IV pili mechanochemically regulate virulence factors inPseudomonas aeruginosa

(2015) Alexandre Persat et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bacteriophages Limit the Existence Conditions for Conjugative Plasmids

(2015) Ellie Harrison et al.   mBio

Co-extinction in a host-parasite network: identifying key hosts for network stability

(2015) Tad Dallas et al.   Scientific Reports

On-Demand Isolation of Bacteriophages Against Drug-Resistant Bacteria for Personalized Phage Therapy

(2015) Sari Mattila et al.   Frontiers in Microbiology

A Window of Opportunity to Control the Bacterial Pathogen Pseudomonas aeruginosa Combining Antibiotics and Phages

(2014) Clara Torres-Barceló et al.   PLoS One

Co-Evolutionary Dynamics of the Bacteria Vibrio sp. CV1 and Phages V1G, V1P1, and V1P2: Implications for Phage Therapy

(2013) Camilo Barbosa et al.   MICROBIAL ECOLOGY

Impact of a Single Phage and a Phage Cocktail Application in Broilers on Reduction of Campylobacter jejuni and Development of Resistance

(2013) Samuel Fischer et al.   PLoS One

Safety analysis of a Russian phage cocktail: From MetaGenomic analysis to oral application in healthy human subjects

(2013) Shawna McCallin et al.   VIROLOGY

Coevolutionary diversification creates nested-modular structure in phage-bacteria interaction networks

(2013) S. J. Beckett et al.   Interface Focus

Effects of Sequential and Simultaneous Applications of Bacteriophages on Populations of Pseudomonas aeruginosaIn Vitroand in Wax Moth Larvae

(2012) Alex R. Hall et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Effects of predation on real-time host-parasite coevolutionary dynamics

(2012) Ville-Petri Friman et al.   ECOLOGY LETTERS

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

Multi-scale structure and geographic drivers of cross-infection within marine bacteria and phages

(2012) Cesar O Flores et al.   ISME Journal

Repeatability and Contingency in the Evolution of a Key Innovation in Phage Lambda

(2012) J. R. Meyer et al.   SCIENCE

Phage–bacteria infection networks

(2012) Joshua S. Weitz et al.   TRENDS IN MICROBIOLOGY

Spatial distribution of microbial communities in the cystic fibrosis lung

(2011) Dana Willner et al.   ISME Journal

Co-evolution with lytic phage selects for the mucoid phenotype of Pseudomonas fluorescens SBW25

(2011) Pauline Deirdre Scanlan et al.   ISME Journal

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

Pulmonary Bacteriophage Therapy on Pseudomonas aeruginosa Cystic Fibrosis Strains: First Steps Towards Treatment and Prevention

(2011) Eric Morello et al.   PLoS One

Antibiotic and metal resistance among hospital and outdoor strains of Pseudomonas aeruginosa

(2011) Amélie Deredjian et al.   RESEARCH IN MICROBIOLOGY

Bacteria-Phage Antagonistic Coevolution in Soil

(2011) P. Gomez et al.   SCIENCE

Phage Therapy in Clinical Practice: Treatment of Human Infections

(2010) Elizabeth Kutter et al.   CURRENT PHARMACEUTICAL BIOTECHNOLOGY

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Bacteriophage resistance mechanisms

(2010) Simon J. Labrie et al.   NATURE REVIEWS MICROBIOLOGY

Stability of Ecological Communities and the Architecture of Mutualistic and Trophic Networks

(2010) E. Thebault et al.   SCIENCE

CRISPR/Cas, the Immune System of Bacteria and Archaea

(2010) P. Horvath et al.   SCIENCE

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Pseudomonas aeruginosabiofilms in the respiratory tract of cystic fibrosis patients

(2009) Thomas Bjarnsholt et al.   PEDIATRIC PULMONOLOGY

Quality-Controlled Small-Scale Production of a Well-Defined Bacteriophage Cocktail for Use in Human Clinical Trials

(2009) Maya Merabishvili et al.   PLoS One

Functional role of conserved residues in the characteristic secretion NTPase motifs of the Pseudomonas aeruginosa type IV pilus motor proteins PilB, PilT and PilU

(2008) P. Chiang et al.   MICROBIOLOGY-SGM