Site-Dependent Differences in DNA Methylation and Their Impact on Plant Establishment and Phosphorus Nutrition in Populus trichocarpa
出版年份 2016 全文链接
标题
Site-Dependent Differences in DNA Methylation and Their Impact on Plant Establishment and Phosphorus Nutrition in Populus trichocarpa
作者
关键词
DNA methylation, MicroRNAs, Gene expression, Poplars, Leaves, Epigenetics, Forestry, Nutrition
出版物
PLoS One
Volume 11, Issue 12, Pages e0168623
出版商
Public Library of Science (PLoS)
发表日期
2016-12-20
DOI
10.1371/journal.pone.0168623
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Epigenomic Diversity in a Global Collection of Arabidopsis thaliana Accessions
- (2016) Taiji Kawakatsu et al. CELL
- Methylation of microRNA genes regulates gene expression in bisexual flower development in andromonoecious poplar
- (2015) Yuepeng Song et al. JOURNAL OF EXPERIMENTAL BOTANY
- Loss of Karma transposon methylation underlies the mantled somaclonal variant of oil palm
- (2015) Meilina Ong-Abdullah et al. NATURE
- Modulation of the Phosphate-Deficient Responses by MicroRNA156 and its Targeted SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 3 in Arabidopsis
- (2015) Kai-Jian Lei et al. PLANT AND CELL PHYSIOLOGY
- Epigenetic Diversity of Clonal White Poplar (Populus alba L.) Populations: Could Methylation Support the Success of Vegetative Reproduction Strategy?
- (2015) Francesco Guarino et al. PLoS One
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Single-base-resolution methylomes of populus trichocarpa reveal the association between DNA methylation and drought stress
- (2014) Dan Liang et al. BMC GENETICS
- Effects of cytosine methylation on transcription factor binding sites
- (2014) Yulia A Medvedeva et al. BMC GENOMICS
- Gene Body Methylation Can Alter Gene Expression and Is a Therapeutic Target in Cancer
- (2014) Xiaojing Yang et al. CANCER CELL
- Epigenetics: a potential mechanism for clonal plant success
- (2014) Vladimir Douhovnikoff et al. PLANT ECOLOGY
- Evolution of DNA Methylation Patterns in the Brassicaceae is Driven by Differences in Genome Organization
- (2014) Danelle K. Seymour et al. PLoS Genetics
- RNA interference in the nucleus: roles for small RNAs in transcription, epigenetics and beyond
- (2013) Stephane E. Castel et al. NATURE REVIEWS GENETICS
- miRBase: annotating high confidence microRNAs using deep sequencing data
- (2013) Ana Kozomara et al. NUCLEIC ACIDS RESEARCH
- Low pH, Aluminum, and Phosphorus Coordinately Regulate Malate Exudation through GmALMT1 to Improve Soybean Adaptation to Acid Soils
- (2013) C. Liang et al. PLANT PHYSIOLOGY
- Primer-BLAST: A tool to design target-specific primers for polymerase chain reaction
- (2012) Jian Ye et al. BMC BIOINFORMATICS
- Dynamic DNA cytosine methylation in the Populus trichocarpa genome: tissue-level variation and relationship to gene expression
- (2012) Kelly J Vining et al. BMC GENOMICS
- Deep Annotation of Populus trichocarpa microRNAs from Diverse Tissue Sets
- (2012) Joshua R. Puzey et al. PLoS One
- Widespread dynamic DNA methylation in response to biotic stress
- (2012) R. H. Dowen et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions
- (2012) Kasper D Hansen et al. GENOME BIOLOGY
- Signaling Network in Sensing Phosphate Availability in Plants
- (2011) Tzyy-Jen Chiou et al. Annual Review of Plant Biology
- Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications
- (2011) Felix Krueger et al. BIOINFORMATICS
- Epigenetic modifications in plants: an evolutionary perspective
- (2011) Suhua Feng et al. CURRENT OPINION IN PLANT BIOLOGY
- Body-Methylated Genes in Arabidopsis thaliana Are Functionally Important and Evolve Slowly
- (2011) S. Takuno et al. MOLECULAR BIOLOGY AND EVOLUTION
- Spontaneous epigenetic variation in the Arabidopsis thaliana methylome
- (2011) Claude Becker et al. NATURE
- Phosphate Deprivation in Maize: Genetics and Genomics
- (2011) C. Calderon-Vazquez et al. PLANT PHYSIOLOGY
- Clone history shapes Populus drought responses
- (2011) S. Raj et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Genetic Regulation by NLA and MicroRNA827 for Maintaining Nitrate-Dependent Phosphate Homeostasis in Arabidopsis
- (2011) Surya Kant et al. PLoS Genetics
- Reference gene selection for quantitative real-time polymerase chain reaction in Populus
- (2010) Meng Xu et al. ANALYTICAL BIOCHEMISTRY
- Differentiation of epigenetic modifications between transposons and genes
- (2010) Hidetoshi Saze et al. CURRENT OPINION IN PLANT BIOLOGY
- Transgenerational plasticity in clonal plants
- (2010) Vít Latzel et al. EVOLUTIONARY ECOLOGY
- Conserved role of intragenic DNA methylation in regulating alternative promoters
- (2010) Alika K. Maunakea et al. NATURE
- Phosphorus supply drives nonlinear responses of cottonwood (Populus deltoides) to increases in CO2 concentration from glacial to future concentrations
- (2010) James D. Lewis et al. NEW PHYTOLOGIST
- Local DNA hypomethylation activates genes in rice endosperm
- (2010) A. Zemach et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Regulation of Alternative Splicing by Histone Modifications
- (2010) R. F. Luco et al. SCIENCE
- RepPop: a database for repetitive elements in Populus trichocarpa
- (2009) Fengfeng Zhou et al. BMC GENOMICS
- Selective epigenetic control of retrotransposition in Arabidopsis
- (2009) Marie Mirouze et al. NATURE
- Human DNA methylomes at base resolution show widespread epigenomic differences
- (2009) Ryan Lister et al. NATURE
- ThePopulusGenome Integrative Explorer (PopGenIE): a new resource for exploring thePopulusgenome
- (2009) Andreas Sjödin et al. NEW PHYTOLOGIST
- Histone H2A.Z Regulates the Expression of Several Classes of Phosphate Starvation Response Genes But Not as a Transcriptional Activator
- (2009) A. P. Smith et al. PLANT PHYSIOLOGY
- The rules of gene expression in plants: Organ identity and gene body methylation are key factors for regulation of gene expression in Arabidopsis thaliana
- (2008) Felipe F Aceituno et al. BMC GENOMICS
- Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis
- (2008) Ryan Lister et al. CELL
- Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning
- (2008) Shawn J. Cokus et al. NATURE
- Stress-responsive microRNAs inPopulus
- (2008) Shanfa Lu et al. PLANT JOURNAL
- Dual coding of siRNAs and miRNAs by plant transposable elements
- (2008) J. Piriyapongsa et al. RNA
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