MetaboClust: Using interactive time-series cluster analysis to relate metabolomic data with perturbed pathways

Improved batch correction in untargeted MS-based metabolomics

(2016) Ron Wehrens et al.   Metabolomics

Statistical Methods for Handling Unwanted Variation in Metabolomics Data

(2015) Alysha M. De Livera et al.   ANALYTICAL CHEMISTRY

Removing batch effects from purified plasma cell gene expression microarrays with modified ComBat

(2015) Caleb K Stein et al.   BMC BIOINFORMATICS

Metabolomic Characterization of Knockout Mutants in Arabidopsis: Development of a Metabolite Profiling Database for Knockout Mutants in Arabidopsis

(2014) A. Fukushima et al.   PLANT PHYSIOLOGY

XCMS Online: A Web-Based Platform to Process Untargeted Metabolomic Data

(2012) Ralf Tautenhahn et al.   ANALYTICAL CHEMISTRY

Identification of Human Plasma Metabolites Exhibiting Time-of-Day Variation Using an Untargeted Liquid Chromatography–Mass Spectrometry Metabolomic Approach

(2012) Joo Ern Ang et al.   CHRONOBIOLOGY INTERNATIONAL

MetaboAnalyst 2.0--a comprehensive server for metabolomic data analysis

(2012) J. Xia et al.   NUCLEIC ACIDS RESEARCH

The human circadian metabolome

(2012) R. Dallmann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bayesian hierarchical clustering for microarray time series data with replicates and outlier measurements

(2011) Emma J Cooke et al.   BMC BIOINFORMATICS

Removing Batch Effects in Analysis of Expression Microarray Data: An Evaluation of Six Batch Adjustment Methods

(2011) Chao Chen et al.   PLoS One

Metabolomic Characterization of the Salt Stress Response in Streptomyces coelicolor

(2010) S. Kol et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

MetAlign: Interface-Driven, Versatile Metabolomics Tool for Hyphenated Full-Scan Mass Spectrometry Data Preprocessing

(2009) Arjen Lommen   ANALYTICAL CHEMISTRY

Assessment of Metabolome Annotation Quality: A Method for Evaluating the False Discovery Rate of Elemental Composition Searches

(2009) Fumio Matsuda et al.   PLoS One

BATS: a Bayesian user-friendly software for Analyzing Time Series microarray experiments

(2008) Claudia Angelini et al.   BMC BIOINFORMATICS

Time-resolved metabolomics reveals metabolic modulation in rice foliage

(2008) Shigeru Sato et al.   BMC Systems Biology