Improved batch correction in untargeted MS-based metabolomics

Statistical Methods for Handling Unwanted Variation in Metabolomics Data

(2015) Alysha M. De Livera et al.   ANALYTICAL CHEMISTRY

Comprehensive metabolomics to evaluate the impact of industrial processing on the phytochemical composition of vegetable purees

(2015) Patricia Lopez-Sanchez et al.   FOOD CHEMISTRY

Gomphrena claussenii, a novel metal-hypertolerant bioindicator species, sequesters cadmium, but not zinc, in vacuolar oxalate crystals

(2015) Mina T. Villafort Carvalho et al.   NEW PHYTOLOGIST

MetaboAnalyst 3.0—making metabolomics more meaningful

(2015) Jianguo Xia et al.   NUCLEIC ACIDS RESEARCH

Diversity and functions of volatile organic compounds produced by Streptomyces from a disease-suppressive soil

(2015) Viviane Cordovez et al.   Frontiers in Microbiology

Intensity drift removal in LC/MS metabolomics by common variance compensation

(2014) Francesc Fernández-Albert et al.   BIOINFORMATICS

Rapid and Sustained Systemic Circulation of Conjugated Gut Microbial Catabolites after Single-Dose Black Tea Extract Consumption

(2014) John van Duynhoven et al.   JOURNAL OF PROTEOME RESEARCH

Experiment design beyond gut feeling: statistical tests and power to detect differential metabolites in mass spectrometry data

(2014) Diana Trutschel et al.   Metabolomics

Metabolomics reveals organ-specific metabolic rearrangements during early tomato seedling development

(2014) Maria Victoria Gomez Roldan et al.   Metabolomics

Normalization of RNA-seq data using factor analysis of control genes or samples

(2014) Davide Risso et al.   NATURE BIOTECHNOLOGY

Characterising and correcting batch variation in an automated direct infusion mass spectrometry (DIMS) metabolomics workflow

(2013) J. A. Kirwan et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

MSPrep—Summarization, normalization and diagnostics for processing of mass spectrometry–based metabolomic data

(2013) Grant Hughes et al.   BIOINFORMATICS

Optimizing the Use of Quality Control Samples for Signal Drift Correction in Large-Scale Urine Metabolic Profiling Studies

(2012) Muhammad Anas Kamleh et al.   ANALYTICAL CHEMISTRY

Mass appeal: metabolite identification in mass spectrometry-focused untargeted metabolomics

(2012) Warwick B. Dunn et al.   Metabolomics

Genome-wide patterns of genetic variation in worldwide Arabidopsis thaliana accessions from the RegMap panel

(2012) Matthew W Horton et al.   NATURE GENETICS

Metabolomics: the apogee of the omics trilogy

(2012) Gary J. Patti et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Optimized Preprocessing of Ultra-Performance Liquid Chromatography/Mass Spectrometry Urinary Metabolic Profiles for Improved Information Recovery

(2011) Kirill A. Veselkov et al.   ANALYTICAL CHEMISTRY

Using control genes to correct for unwanted variation in microarray data

(2011) J. A. Gagnon-Bartsch et al.   BIOSTATISTICS

MSClust: a tool for unsupervised mass spectra extraction of chromatography-mass spectrometry ion-wise aligned data

(2011) Y. M. Tikunov et al.   Metabolomics

Procedures for large-scale metabolic profiling of serum and plasma using gas chromatography and liquid chromatography coupled to mass spectrometry

(2011) Warwick B Dunn et al.   Nature Protocols

Data-processing strategies for metabolomics studies

(2011) Margriet M.W.B. Hendriks et al.   TRAC-TRENDS IN ANALYTICAL CHEMISTRY

Equating, or Correction for Between-Block Effects with Application to Body Fluid LC−MS and NMR Metabolomics Data Sets

(2010) Harmen H. M. Draisma et al.   ANALYTICAL CHEMISTRY

Association mapping of local climate-sensitive quantitative trait loci in Arabidopsis thaliana

(2010) Y. Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MetAlign: Interface-Driven, Versatile Metabolomics Tool for Hyphenated Full-Scan Mass Spectrometry Data Preprocessing

(2009) Arjen Lommen   ANALYTICAL CHEMISTRY

Evaluation of regression methods when immunological measurements are constrained by detection limits

(2008) Hae-Won Uh et al.   BMC IMMUNOLOGY