Microbial expression profiles in the rhizosphere of two maize lines differing in N use efficiency

Nitrate induction and physiological responses of two maize lines differing in nitrogen use efficiency: effects on N availability, microbial diversity and enzyme activity in the rhizosphere

(2017) Zeno Varanini et al.   PLANT AND SOIL

Feed in summer, rest in winter: microbial carbon utilization in forest topsoil

(2017) Lucia Žifčáková et al.   Microbiome

Availability of different nitrogen forms changes the microbial communities and enzyme activities in the rhizosphere of maize lines with different nitrogen use efficiency

(2016) Laura Giagnoni et al.   APPLIED SOIL ECOLOGY

Protease encoding microbial communities and protease activity of the rhizosphere and bulk soils of two maize lines with different N uptake efficiency

(2016) Divyashri Baraniya et al.   SOIL BIOLOGY & BIOCHEMISTRY

Maize lines with different nitrogen use efficiency select bacterial communities with different β-glucosidase-encoding genes and glucosidase activity in the rhizosphere

(2015) Shamina I. Pathan et al.   BIOLOGY AND FERTILITY OF SOILS

Microbial activity in forest soil reflects the changes in ecosystem properties between summer and winter

(2015) Lucia Žifčáková et al.   ENVIRONMENTAL MICROBIOLOGY

Metabolomics Suggests That Soil Inoculation with Arbuscular Mycorrhizal Fungi Decreased Free Amino Acid Content in Roots of Durum Wheat Grown under N-Limited, P-Rich Field Conditions

(2015) Sergio Saia et al.   PLoS One

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Nitrate induction triggers different transcriptional changes in a high and a low nitrogen use efficiency maize inbred line

(2014) Anita Zamboni et al.   Journal of Integrative Plant Biology

Land Use Type Significantly Affects Microbial Gene Transcription in Soil

(2014) Heiko Nacke et al.   MICROBIAL ECOLOGY

Enzyme activity and microbial community structure in the rhizosphere of two maize lines differing in N use efficiency

(2014) Shamina I. Pathan et al.   PLANT AND SOIL

Tackling soil diversity with the assembly of large, complex metagenomes

(2014) Adina Chuang Howe et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Isolation and characterization of a heterotrophic nitrifier Proteus mirabilis strain V7 and its potential application in NH4 +-N removal

(2013) Wei Wei Zhang et al.   ANNALS OF MICROBIOLOGY

Diversity and heritability of the maize rhizosphere microbiome under field conditions

(2013) J. A. Peiffer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dynamics of the bacterial community structure in the rhizosphere of a maize cultivar

(2013) Xiangzhen Li et al.   SOIL BIOLOGY & BIOCHEMISTRY

Importance of rare taxa for bacterial diversity in the rhizosphere of Bt- and conventional maize varieties

(2012) Anja B Dohrmann et al.   ISME Journal

Application of metatranscriptomics to soil environments

(2012) Lilia C. Carvalhais et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Scaling metagenome sequence assembly with probabilistic de Bruijn graphs

(2012) J. Pell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Soil solid phases effects on the proteomic analysis of Cupriavidus metallidurans CH34

(2011) Laura Giagnoni et al.   BIOLOGY AND FERTILITY OF SOILS

Extraction of microbial proteome from soil: potential and limitations assessed through a model study

(2010) L. Giagnoni et al.   EUROPEAN JOURNAL OF SOIL SCIENCE

Plant genotype strongly modifies the structure and growth of maize rhizosphere microbial communities

(2010) Manuel Aira et al.   SOIL BIOLOGY & BIOCHEMISTRY

Comparative day/night metatranscriptomic analysis of microbial communities in the North Pacific subtropical gyre

(2009) Rachel S. Poretsky et al.   ENVIRONMENTAL MICROBIOLOGY

Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere

(2009) Gabriele Berg et al.   FEMS MICROBIOLOGY ECOLOGY

Coding region structural heterogeneity and turnover of transcription start sites contribute to divergence in expression between duplicate genes

(2009) Chungoo Park et al.   GENOME BIOLOGY

The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes

(2008) F Meyer et al.   BMC BIOINFORMATICS

Phylogenetic diversity of Acidobacteria in a former agricultural soil

(2008) Anna Kielak et al.   ISME Journal

Biochemical cycling in the rhizosphere having an impact on global change

(2008) L. Philippot et al.   PLANT AND SOIL

Elucidation of the Final Reactions of DIMBOA-Glucoside Biosynthesis in Maize: Characterization of Bx6 and Bx7

(2008) R. Jonczyk et al.   PLANT PHYSIOLOGY

Simultaneous Assessment of Soil Microbial Community Structure and Function through Analysis of the Meta-Transcriptome

(2008) Tim Urich et al.   PLoS One

Development of a pressurized liquid extraction–solid-phase extraction followed by liquid chromatography–electrospray ionization tandem mass spectrometry method for the quantitative determination of benzoxazolinones and their degradation products in agricultural soil

(2007) M. Villagrasa et al.   JOURNAL OF CHROMATOGRAPHY A