Escherichia coli “Marionette” strains with 12 highly optimized small-molecule sensors

Directed evolution of a synthetic phylogeny of programmable Trp repressors

(2018) Jared W. Ellefson et al.   Nature Chemical Biology

Dynamic regulation of metabolic flux in engineered bacteria using a pathway-independent quorum-sensing circuit

(2017) Apoorv Gupta et al.   NATURE BIOTECHNOLOGY

Balancing gene expression without library construction via a reusable sRNA pool

(2017) Amar Ghodasara et al.   NUCLEIC ACIDS RESEARCH

Visualization and characterization of individual type III protein secretion machines in live bacteria

(2017) Yongdeng Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cell-Free and In Vivo Characterization of Lux, Las, and Rpa Quorum Activation Systems in E. coli

(2017) Andrew D. Halleran et al.   ACS Synthetic Biology

Directed evolution of the autoinducer selectivity of Vibrio fischeri LuxR

(2016) Yohei Tashiro et al.   JOURNAL OF GENERAL AND APPLIED MICROBIOLOGY

Creating Single-Copy Genetic Circuits

(2016) Jeong Wook Lee et al.   MOLECULAR CELL

Evolving Orthogonal Suppressor tRNAs To Incorporate Modified Amino Acids

(2016) Andre C. Maranhao et al.   ACS Synthetic Biology

Quorum Sensing Communication Modules for Microbial Consortia

(2016) Spencer R. Scott et al.   ACS Synthetic Biology

Isocost Lines Describe the Cellular Economy of Genetic Circuits

(2015) Andras Gyorgy et al.   BIOPHYSICAL JOURNAL

Engineering an allosteric transcription factor to respond to new ligands

(2015) Noah D Taylor et al.   NATURE METHODS

Targeted DNA degradation using a CRISPR device stably carried in the host genome

(2015) Brian J. Caliando et al.   Nature Communications

Evolutionary Design of Choline-Inducible and -Repressible T7-Based Induction Systems

(2015) Kohei Ike et al.   ACS Synthetic Biology

Quantifying Absolute Protein Synthesis Rates Reveals Principles Underlying Allocation of Cellular Resources

(2014) Gene-Wei Li et al.   CELL

Functional optimization of gene clusters by combinatorial design and assembly

(2014) Michael J Smanski et al.   NATURE BIOTECHNOLOGY

A single mutation in the core domain of the lac repressor reduces leakiness

(2013) Pietro Gatti-Lafranconi et al.   Microbial Cell Factories

Directed evolution of genetic parts and circuits by compartmentalized partnered replication

(2013) Jared W Ellefson et al.   NATURE BIOTECHNOLOGY

CRISPR interference (CRISPRi) for sequence-specific control of gene expression

(2013) Matthew H Larson et al.   Nature Protocols

Genome dynamics during experimental evolution

(2013) Jeffrey E. Barrick et al.   NATURE REVIEWS GENETICS

Expression-level optimization of a multi-enzyme pathway in the absence of a high-throughput assay

(2013) Michael E. Lee et al.   NUCLEIC ACIDS RESEARCH

Spanning high-dimensional expression space using ribosome-binding site combinatorics

(2013) Lior Zelcbuch et al.   NUCLEIC ACIDS RESEARCH

Engineered rRNA Enhances the Efficiency of Selenocysteine Incorporation during Translation

(2012) Ross Thyer et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Genetic switchboard for synthetic biology applications

(2012) J. M. Callura et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Thermodynamic Analysis of Mutant lac Repressors

(2011) Robert Daber et al.   JOURNAL OF MOLECULAR BIOLOGY

Queueing up for enzymatic processing: correlated signaling through coupled degradation

(2011) N. A. Cookson et al.   Molecular Systems Biology

Condition-Dependent Cell Volume and Concentration of Escherichia coli to Facilitate Data Conversion for Systems Biology Modeling

(2011) Benjamin Volkmer et al.   PLoS One

Rapid optimization of gene dosage in E. coli using DIAL strains

(2011) Joshua T Kittleson et al.   Journal of Biological Engineering

A nucleoside kinase as a dual selector for genetic switches and circuits

(2010) Yohei Tashiro et al.   NUCLEIC ACIDS RESEARCH

Interdependence of Cell Growth and Gene Expression: Origins and Consequences

(2010) M. Scott et al.   SCIENCE

Automated design of synthetic ribosome binding sites to control protein expression

(2009) Howard M Salis et al.   NATURE BIOTECHNOLOGY

AraC Regulatory Protein Mutants with Altered Effector Specificity

(2008) Shuang-Yan Tang et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY