Approaches to integrating genetic data into ecological networks

Assessing niche partitioning of co-occurring sibling bat species by DNA metabarcoding

(2018) Aitor Arrizabalaga-Escudero et al.   MOLECULAR ECOLOGY

Counting with DNA in metabarcoding studies: How should we convert sequence reads to dietary data?

(2018) Bruce E. Deagle et al.   MOLECULAR ECOLOGY

Using metabarcoding to compare the suitability of two blood-feeding leech species for sampling mammalian diversity in North Borneo

(2018) Rosie Drinkwater et al.   Molecular Ecology Resources

Impact of urbanisation and agriculture on the diet of fruit bats

(2017) Voon-Ching Lim et al.   URBAN ECOSYSTEMS

Testing the Efficacy of DNA Barcodes for Identifying the Vascular Plants of Canada

(2017) Thomas W. A. Braukmann et al.   PLoS One

Describe, understand and predict: why do we need networks in ecology?

(2016) Timothée Poisot et al.   FUNCTIONAL ECOLOGY

Merging DNA metabarcoding and ecological network analysis to understand and build resilient terrestrial ecosystems

(2016) Darren M. Evans et al.   FUNCTIONAL ECOLOGY

The use of DNA barcodes in food web construction—terrestrial and aquatic ecologists unite!

(2016) Tomas Roslin et al.   GENOME

The effects of parameter choice on defining molecular operational taxonomic units and resulting ecological analyses of metabarcoding data

(2016) Elizabeth L. Clare et al.   GENOME

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update

(2016) Enis Afgan et al.   NUCLEIC ACIDS RESEARCH

Dietary overlap and seasonality in three species of mormoopid bats from a tropical dry forest

(2015) Valeria B. Salinas-Ramos et al.   MOLECULAR ECOLOGY

Quantitative DNA metabarcoding: improved estimates of species proportional biomass using correction factors derived from control material

(2015) Austen C. Thomas et al.   Molecular Ecology Resources

High-throughput DNA barcoding for ecological network studies

(2015) Hirokazu Toju   POPULATION ECOLOGY

Toward accurate molecular identification of species in complex environmental samples: testing the performance of sequence filtering and clustering methods

(2015) Jullien M. Flynn et al.   Ecology and Evolution

Large-Scale Biomonitoring of Remote and Threatened Ecosystems via High-Throughput Sequencing

(2015) Joel F. Gibson et al.   PLoS One

Molecular detection of trophic interactions: emerging trends, distinct advantages, significant considerations and conservation applications

(2014) Elizabeth L. Clare   Evolutionary Applications

Island bat diets: does it matter more who you are or where you live?

(2014) Jodi L. Sedlock et al.   MOLECULAR ECOLOGY

Complementary molecular information changes our perception of food web structure

(2014) Helena K. Wirta et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Environmental DNA for wildlife biology and biodiversity monitoring

(2014) Kristine Bohmann et al.   TRENDS IN ECOLOGY & EVOLUTION

Who dispersed the seeds? The use of DNA barcoding in frugivory and seed dispersal studies

(2014) Juan P. González-Varo et al.   Methods in Ecology and Evolution

Trophic niche flexibility inGlossophaga soricina: how a nectar seeker sneaks an insect snack

(2013) Elizabeth L. Clare et al.   FUNCTIONAL ECOLOGY

An inordinate fondness for beetles? Variation in seasonal dietary preferences of night-roosting big brown bats (Eptesicus fuscus)

(2013) Elizabeth L. Clare et al.   MOLECULAR ECOLOGY

Quantifying sequence proportions in a DNA-based diet study using Ion Torrent amplicon sequencing: which counts count?

(2013) Bruce E. Deagle et al.   Molecular Ecology Resources

A pragmatic approach to the analysis of diets of generalist predators: the use of next-generation sequencing with no blocking probes

(2013) J. Piñol et al.   Molecular Ecology Resources

A DNA ‘Barcode Blitz’: Rapid Digitization and Sequencing of a Natural History Collection

(2013) Paul D. N. Hebert et al.   PLoS One

A DNA-Based Registry for All Animal Species: The Barcode Index Number (BIN) System

(2013) Sujeevan Ratnasingham et al.   PLoS One

COEVOLUTION AND THE ARCHITECTURE OF MUTUALISTIC NETWORKS

(2012) Scott L. Nuismer et al.   EVOLUTION

The Robustness and Restoration of a Network of Ecological Networks

(2012) M. J. O. Pocock et al.   SCIENCE

Cheddar: analysis and visualisation of ecological communities in R

(2012) Lawrence N. Hudson et al.   Methods in Ecology and Evolution

Evolution and coevolution in mutualistic networks

(2011) Paulo R. Guimarães Jr et al.   ECOLOGY LETTERS

Integrative analysis of environmental sequences using MEGAN4

(2011) D. H. Huson et al.   GENOME RESEARCH

Who is eating what: diet assessment using next generation sequencing

(2011) FRANCOIS POMPANON et al.   MOLECULAR ECOLOGY

Eating local: influences of habitat on the diet of little brown bats (Myotis lucifugus)

(2011) E. L. CLARE et al.   MOLECULAR ECOLOGY

Proportion of prey consumed can be determined from faecal DNA using real-time PCR

(2011) ELLA BOWLES et al.   Molecular Ecology Resources

Neotropical Bats: Estimating Species Diversity with DNA Barcodes

(2011) Elizabeth L. Clare et al.   PLoS One

Discriminating plant species in a local temperate flora using the rbcL+matK DNA barcode

(2011) Kevin S. Burgess et al.   Methods in Ecology and Evolution

The robustness of pollination networks to the loss of species and interactions: a quantitative approach incorporating pollinator behaviour

(2010) Christopher N. Kaiser-Bunbury et al.   ECOLOGY LETTERS

Coupling non-destructive DNA extraction and voucher retrieval for small soft-bodied Arthropods in a high-throughput context: the example of Collembola

(2010) DAVID PORCO et al.   Molecular Ecology Resources

Taxon-specific PCR for DNA barcoding arthropod prey in bat faeces

(2010) MATT R. K. ZEALE et al.   Molecular Ecology Resources

Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines

(2010) Susanna Atwell et al.   NATURE

Stability of Ecological Communities and the Architecture of Mutualistic and Trophic Networks

(2010) E. Thebault et al.   SCIENCE

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Selection of candidate coding DNA barcoding regions for use on land plants

(2009) CAROLINE S. FORD et al.   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Centrality measures and the importance of generalist species in pollination networks

(2009) Ana M. Martín González et al.   Ecological Complexity

A DNA barcode for land plants

(2009) et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Review: Ecological networks - beyond food webs

(2008) Thomas C. Ings et al.   JOURNAL OF ANIMAL ECOLOGY

INVITED REVIEW: Molecular analysis of predation: a review of best practice for DNA-based approaches

(2008) R. A. KING et al.   MOLECULAR ECOLOGY

Multiple Multilocus DNA Barcodes from the Plastid Genome Discriminate Plant Species Equally Well

(2008) Aron J. Fazekas et al.   PLoS One

DNA barcoding the floras of biodiversity hotspots

(2008) R. Lahaye et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DNA barcoding in surveys of small mammal communities: a field study in Suriname

(2007) ALEX V. BORISENKO et al.   Molecular Ecology Resources