MAbTope: A Method for Improved Epitope Mapping

Molecular Basis for the Neutralization of Tumor Necrosis Factor α by Certolizumab Pegol in the Treatment of Inflammatory Autoimmune Diseases

(2017) Jee Lee et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Modeling and docking of antibody structures with Rosetta

(2017) Brian D Weitzner et al.   Nature Protocols

ArrayPitope: Automated Analysis of Amino Acid Substitutions for Peptide Microarray-Based Antibody Epitope Mapping

(2017) Christian Skjødt Hansen et al.   PLoS One

FRODOCK 2.0: fast protein–protein docking server

(2016) Erney Ramírez-Aportela et al.   BIOINFORMATICS

Identification of the epidermal growth factor receptor as the receptor for Salmonella Rck–dependent invasion

(2016) Agnès Wiedemann et al.   FASEB JOURNAL

Mass spectrometric epitope mapping

(2016) Kwabena F.M. Opuni et al.   MASS SPECTROMETRY REVIEWS

SAbPred: a structure-based antibody prediction server

(2016) James Dunbar et al.   NUCLEIC ACIDS RESEARCH

Progress and challenges in predicting protein interfaces

(2015) Reyhaneh Esmaielbeiki et al.   BRIEFINGS IN BIOINFORMATICS

Unraveling the molecular architecture of a G protein-coupled receptor/β-arrestin/Erk module complex

(2015) Thomas Bourquard et al.   Scientific Reports

Biological Agents for Moderately to Severely Active Ulcerative Colitis

(2014) Silvio Danese et al.   ANNALS OF INTERNAL MEDICINE

Specificity, polyspecificity, and heterospecificity of antibody-antigen recognition

(2014) Marc H. V. Van Regenmortel   JOURNAL OF MOLECULAR RECOGNITION

Characterization of golimumab, a human monoclonal antibody specific for human tumor necrosis factor α

(2014) David J. Shealy et al.   mAbs

Proteome-wide Epitope Mapping of Antibodies Using Ultra-dense Peptide Arrays

(2014) Björn Forsström et al.   MOLECULAR & CELLULAR PROTEOMICS

Hydrogen/deuterium exchange mass spectrometry for probing higher order structure of protein therapeutics: methodology and applications

(2013) Hui Wei et al.   DRUG DISCOVERY TODAY

Comparison of the Inhibition Mechanisms of Adalimumab and Infliximab in Treating Tumor Necrosis Factor α-Associated Diseases from a Molecular View

(2013) Shi Hu et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Structural Basis for Treating Tumor Necrosis Factor α (TNFα)-associated Diseases with the Therapeutic Antibody Infliximab

(2013) Shuaiyi Liang et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Conformational B-Cell Epitope Prediction on Antigen Protein Structures: A Review of Current Algorithms and Comparison with Common Binding Site Prediction Methods

(2013) Bo Yao et al.   PLoS One

Antibody i-Patch prediction of the antibody binding site improves rigid local antibody-antigen docking

(2013) K. Krawczyk et al.   PROTEIN ENGINEERING DESIGN & SELECTION

Protein docking using case-based reasoning

(2013) Anisah W. Ghoorah et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Application of asymmetric statistical potentials to antibody-protein docking

(2012) R. Brenke et al.   BIOINFORMATICS

Systematic Review and Meta-Analysis of the Efficacy and Safety of Existing TNF Blocking Agents in Treatment of Rheumatoid Arthritis

(2012) Kalle J. Aaltonen et al.   PLoS One

A Collaborative Filtering Approach for Protein-Protein Docking Scoring Functions

(2011) Thomas Bourquard et al.   PLoS One

Partner-Aware Prediction of Interacting Residues in Protein-Protein Complexes from Sequence Data

(2011) Shandar Ahmad et al.   PLoS One

Focused Evolution of HIV-1 Neutralizing Antibodies Revealed by Structures and Deep Sequencing

(2011) X. Wu et al.   SCIENCE

FRODOCK: a new approach for fast rotational protein–protein docking

(2009) José Ignacio Garzon et al.   BIOINFORMATICS