Phylogenomic incongruence, hypothesis testing, and taxonomic sampling: The monophyly of characiform fishes
出版年份 2018 全文链接
标题
Phylogenomic incongruence, hypothesis testing, and taxonomic sampling: The monophyly of characiform fishes
作者
关键词
-
出版物
EVOLUTION
Volume -, Issue -, Pages -
出版商
Wiley
发表日期
2018-11-14
DOI
10.1111/evo.13649
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Comprehensive phylogeny of ray-finned fishes (Actinopterygii) based on transcriptomic and genomic data
- (2018) Lily C. Hughes et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Analyzing Contentious Relationships and Outlier Genes in Phylogenomics
- (2018) Joseph F Walker et al. SYSTEMATIC BIOLOGY
- Phylogenomic Perspective on the Relationships and Evolutionary History of the Major Otocephalan Lineages
- (2018) Wei Dai et al. Scientific Reports
- Explosive diversification of marine fishes at the Cretaceous–Palaeogene boundary
- (2018) Michael E. Alfaro et al. Nature Ecology & Evolution
- Phylogenetic relationships of the family Tarumaniidae (Characiformes) based on nuclear and mitochondrial data
- (2018) Dahiana Arcila et al. Neotropical Ichthyology
- Expanded Taxonomic Sampling Coupled with Gene Genealogy Interrogation Provides Unambiguous Resolution for the Evolutionary Root of Angiosperms
- (2017) Bojian Zhong et al. Genome Biology and Evolution
- Phylogenomic Systematics of Ostariophysan Fishes: Ultraconserved Elements Support the Surprising Non-Monophyly of Characiformes
- (2017) Prosanta Chakrabarty et al. SYSTEMATIC BIOLOGY
- Why Do Phylogenomic Data Sets Yield Conflicting Trees? Data Type Influences the Avian Tree of Life more than Taxon Sampling
- (2017) Sushma Reddy et al. SYSTEMATIC BIOLOGY
- A new family of neotropical freshwater fishes from deep fossorial Amazonian habitat, with a reappraisal of morphological characiform phylogeny (Teleostei: Ostariophysi)
- (2017) Mário de Pinna et al. ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY
- Phylogenomics: Constrained gene tree inference
- (2017) Siavash Mirarab Nature Ecology & Evolution
- Contentious relationships in phylogenomic studies can be driven by a handful of genes
- (2017) Xing-Xing Shen et al. Nature Ecology & Evolution
- Genome-wide interrogation advances resolution of recalcitrant groups in the tree of life
- (2017) Dahiana Arcila et al. Nature Ecology & Evolution
- Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database
- (2016) Jeremy Pasquier et al. BMC GENOMICS
- The effects of subsampling gene trees on coalescent methods applied to ancient divergences
- (2016) Mark P. Simmons et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Implementing and testing the multispecies coalescent model: A valuable paradigm for phylogenomics
- (2016) Scott V. Edwards et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- The gene tree delusion
- (2016) Mark S. Springer et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- ASTRAL-II: coalescent-based species tree estimation with many hundreds of taxa and thousands of genes
- (2015) Siavash Mirarab et al. BIOINFORMATICS
- A comparative study of SVDquartets and other coalescent-based species tree estimation methods
- (2015) Jed Chou et al. BMC GENOMICS
- Avoiding Missing Data Biases in Phylogenomic Inference: An Empirical Study in the Landfowl (Aves: Galliformes)
- (2015) Peter A. Hosner et al. MOLECULAR BIOLOGY AND EVOLUTION
- High speed BLASTN: an accelerated MegaBLAST search tool
- (2015) Ying Chen et al. NUCLEIC ACIDS RESEARCH
- Correction for Song et al., Resolving conflict in eutherian mammal phylogeny using phylogenomics and the multispecies coalescent model
- (2015) PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Genomic data do not support comb jellies as the sister group to all other animals
- (2015) Davide Pisani et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Error, signal, and the placement of Ctenophora sister to all other animals
- (2015) Nathan V. Whelan et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- On the Robustness to Gene Tree Estimation Error (or lack thereof) of Coalescent-Based Species Tree Methods
- (2015) Sebastien Roch et al. SYSTEMATIC BIOLOGY
- Animal Phylogeny and Its Evolutionary Implications
- (2014) Casey W. Dunn et al. Annual Review of Ecology Evolution and Systematics
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Phylogenetic informativeness reconciles ray-finned fish molecular divergence times
- (2014) Alex Dornburg et al. BMC EVOLUTIONARY BIOLOGY
- Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
- (2014) Daniel J. Field et al. EVOLUTION & DEVELOPMENT
- Novel Information Theory-Based Measures for Quantifying Incongruence among Phylogenetic Trees
- (2014) Leonidas Salichos et al. MOLECULAR BIOLOGY AND EVOLUTION
- Statistical binning enables an accurate coalescent-based estimation of the avian tree
- (2014) S. Mirarab et al. SCIENCE
- EVOLUTIONARY ORIGIN AND EARLY BIOGEOGRAPHY OF OTOPHYSAN FISHES (OSTARIOPHYSI: TELEOSTEI)
- (2013) Wei-Jen Chen et al. EVOLUTION
- Inferring ancient divergences requires genes with strong phylogenetic signals
- (2013) Leonidas Salichos et al. NATURE
- Are characiform Fishes Gondwanan in Origin? Insights from a Time-Scaled Molecular Phylogeny of the Citharinoidei (Ostariophysi: Characiformes)
- (2013) Jairo Arroyave et al. PLoS One
- The Genome of the Ctenophore Mnemiopsis leidyi and Its Implications for Cell Type Evolution
- (2013) J. F. Ryan et al. SCIENCE
- Conserved Genes, Sampling Error, and Phylogenomic Inference
- (2013) Ricardo Betancur-R. et al. SYSTEMATIC BIOLOGY
- Phylogenomic analyses support the position of turtles as the sister group of birds and crocodiles (Archosauria)
- (2012) Ylenia Chiari et al. BMC BIOLOGY
- Origin of land plants revisited in the light of sequence contamination and missing data
- (2012) Simon Laurin-Lemay et al. CURRENT BIOLOGY
- Resolving conflict in eutherian mammal phylogeny using phylogenomics and the multispecies coalescent model
- (2012) S. Song et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Resolution of ray-finned fish phylogeny and timing of diversification
- (2012) T. J. Near et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- MicroRNAs support a turtle + lizard clade
- (2011) T. R. Lyson et al. Biology Letters
- Evolutionary history of Otophysi (Teleostei), a major clade of the modern freshwater fishes: Pangaean origin and Mesozoic radiation
- (2011) Masanori Nakatani et al. BMC EVOLUTIONARY BIOLOGY
- Phylogenetic relationships within the speciose family Characidae (Teleostei: Ostariophysi: Characiformes) based on multilocus analysis and extensive ingroup sampling
- (2011) Claudio Oliveira et al. BMC EVOLUTIONARY BIOLOGY
- Full-length transcriptome assembly from RNA-Seq data without a reference genome
- (2011) Manfred G Grabherr et al. NATURE BIOTECHNOLOGY
- Impacts of the Cretaceous Terrestrial Revolution and KPg Extinction on Mammal Diversification
- (2011) R. W. Meredith et al. SCIENCE
- Missing Data in Phylogenetic Analysis: Reconciling Results from Simulations and Empirical Data
- (2011) John J. Wiens et al. SYSTEMATIC BIOLOGY
- Resolving Difficult Phylogenetic Questions: Why More Sequences Are Not Enough
- (2011) Hervé Philippe et al. PLOS BIOLOGY
- Bayesian Inference of Species Trees from Multilocus Data
- (2009) J. Heled et al. MOLECULAR BIOLOGY AND EVOLUTION
- IS A NEW AND GENERAL THEORY OF MOLECULAR SYSTEMATICS EMERGING?
- (2008) Scott V. Edwards EVOLUTION
Become a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get StartedAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started