Comparative integrated omics: identification of key functionalities in microbial community-wide metabolic networks
出版年份 2015 全文链接
标题
Comparative integrated omics: identification of key functionalities in microbial community-wide metabolic networks
作者
关键词
-
出版物
npj Biofilms and Microbiomes
Volume 1, Issue 1, Pages -
出版商
Springer Nature
发表日期
2015-06-16
DOI
10.1038/npjbiofilms.2015.7
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Integrated omics for the identification of key functionalities in biological wastewater treatment microbial communities
- (2015) Shaman Narayanasamy et al. Microbial Biotechnology
- Lipid-based biofuel production from wastewater
- (2014) Emilie EL Muller et al. CURRENT OPINION IN BIOTECHNOLOGY
- Which is more important for classifying microbial communities: who’s there or what they can do?
- (2014) Zhenjiang Xu et al. ISME Journal
- Evaluation of metatranscriptomic protocols and application to the study of freshwater microbial communities
- (2014) Despina Tsementzi et al. Environmental Microbiology Reports
- A hundred years of activated sludge: time for a rethink
- (2014) Abdul R. Sheik et al. Frontiers in Microbiology
- Deciphering microbial interactions and detecting keystone species with co-occurrence networks
- (2014) David Berry et al. Frontiers in Microbiology
- One-stage partial nitritation/anammox at 15 °C on pretreated sewage: feasibility demonstration at lab-scale
- (2013) Haydée De Clippeleir et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- MetaPathways: a modular pipeline for constructing pathway/genome databases from environmental sequence information
- (2013) Kishori M Konwar et al. BMC BIOINFORMATICS
- Towards a predictive systems-level model of the human microbiome: progress, challenges, and opportunities
- (2013) Sharon Greenblum et al. CURRENT OPINION IN BIOTECHNOLOGY
- AmphoraNet: The webserver implementation of the AMPHORA2 metagenomic workflow suite
- (2013) Csaba Kerepesi et al. GENE
- Metabolic model for the filamentous ‘Candidatus Microthrix parvicella’ based on genomic and metagenomic analyses
- (2013) Simon Jon McIlroy et al. ISME Journal
- Data, information, knowledge and principle: back to metabolism in KEGG
- (2013) Minoru Kanehisa et al. NUCLEIC ACIDS RESEARCH
- Condensing the omics fog of microbial communities
- (2013) Emilie E.L. Muller et al. TRENDS IN MICROBIOLOGY
- Metagenomic analysis on seasonal microbial variations of activated sludge from a full-scale wastewater treatment plant over 4 years
- (2013) Feng Ju et al. Environmental Microbiology Reports
- CD-HIT: accelerated for clustering the next-generation sequencing data
- (2012) Limin Fu et al. BIOINFORMATICS
- PANDAseq: paired-end assembler for illumina sequences
- (2012) Andre P Masella et al. BMC BIOINFORMATICS
- Computational systems biology and in silico modeling of the human microbiome
- (2012) E. Borenstein BRIEFINGS IN BIOINFORMATICS
- Microbial metaproteomics: identifying the repertoire of proteins that microorganisms use to compete and cooperate in complex environmental communities
- (2012) Robert L. Hettich et al. CURRENT OPINION IN MICROBIOLOGY
- A biomolecular isolation framework for eco-systems biology
- (2012) Hugo Roume et al. ISME Journal
- Ruminococcus bromii is a keystone species for the degradation of resistant starch in the human colon
- (2012) Xiaolei Ze et al. ISME Journal
- Genome Sequence of “Candidatus Microthrix parvicella” Bio17-1, a Long-Chain-Fatty-Acid-Accumulating Filamentous Actinobacterium from a Biological Wastewater Treatment Plant
- (2012) Emilie E. L. Muller et al. JOURNAL OF BACTERIOLOGY
- SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
- (2012) Anton Bankevich et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Popular molecular markers in bacteria
- (2012) Weilong Liu et al. Molecular Genetics Microbiology and Virology
- Microbial interactions: from networks to models
- (2012) Karoline Faust et al. NATURE REVIEWS MICROBIOLOGY
- Metagenomic and Metatranscriptomic Analysis of Microbial Community Structure and Gene Expression of Activated Sludge
- (2012) Ke Yu et al. PLoS One
- MOCAT: A Metagenomics Assembly and Gene Prediction Toolkit
- (2012) Jens Roat Kultima et al. PLoS One
- Cultivation of microalgae (Oscillatoria okeni and Chlorella vulgaris) using tilapia-pond effluent and a comparison of their biomass removal efficiency
- (2012) S. Attasat et al. WATER SCIENCE AND TECHNOLOGY
- Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome
- (2012) Sahar Abubucker et al. PLoS Computational Biology
- Microbial Metabolomics
- (2011) Jane Tang CURRENT GENOMICS
- Marine bacterial, archaeal and protistan association networks reveal ecological linkages
- (2011) Joshua A Steele et al. ISME Journal
- The activity level of a microbial community function can be predicted from its metatranscriptome
- (2011) Damian E Helbling et al. ISME Journal
- 454 Pyrosequencing reveals bacterial diversity of activated sludge from 14 sewage treatment plants
- (2011) Tong Zhang et al. ISME Journal
- iProphet: Multi-level Integrative Analysis of Shotgun Proteomic Data Improves Peptide and Protein Identification Rates and Error Estimates
- (2011) David Shteynberg et al. MOLECULAR & CELLULAR PROTEOMICS
- Controllability of complex networks
- (2011) Yang-Yu Liu et al. NATURE
- PoPoolation: A Toolbox for Population Genetic Analysis of Next Generation Sequencing Data from Pooled Individuals
- (2011) Robert Kofler et al. PLoS One
- Metagenomic systems biology of the human gut microbiome reveals topological shifts associated with obesity and inflammatory bowel disease
- (2011) S. Greenblum et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Cytoscape 2.8: new features for data integration and network visualization
- (2010) M. E. Smoot et al. BIOINFORMATICS
- Prodigal: prokaryotic gene recognition and translation initiation site identification
- (2010) Doug Hyatt et al. BMC BIOINFORMATICS
- AMD biofilms: using model communities to study microbial evolution and ecological complexity in nature
- (2010) Vincent J Denef et al. ISME Journal
- Emergent cooperation in microbial metabolism
- (2010) Edwin H Wintermute et al. Molecular Systems Biology
- Accurate quantification of transcriptome from RNA-Seq data by effective length normalization
- (2010) Soohyun Lee et al. NUCLEIC ACIDS RESEARCH
- FragGeneScan: predicting genes in short and error-prone reads
- (2010) Mina Rho et al. NUCLEIC ACIDS RESEARCH
- A guided tour of the Trans-Proteomic Pipeline
- (2010) Eric W. Deutsch et al. PROTEOMICS
- Exploring research frontiers in microbiology: the challenge of metagenomics in soil microbiology
- (2010) Stefano Mocali et al. RESEARCH IN MICROBIOLOGY
- Graph-Based Analysis of the Metabolic Exchanges between Two Co-Resident Intracellular Symbionts, Baumannia cicadellinicola and Sulcia muelleri, with Their Insect Host, Homalodisca coagulata
- (2010) Ludovic Cottret et al. PLoS Computational Biology
- Microbial community proteomics: elucidating the catalysts and metabolic mechanisms that drive the Earth's biogeochemical cycles
- (2009) Paul Wilmes et al. CURRENT OPINION IN MICROBIOLOGY
- ABySS: A parallel assembler for short read sequence data
- (2009) J. T. Simpson et al. GENOME RESEARCH
- Metabolic Pathfinding Using RPAIR Annotation
- (2009) Karoline Faust et al. JOURNAL OF MOLECULAR BIOLOGY
- Applications of genome-scale metabolic reconstructions
- (2009) Matthew A Oberhardt et al. Molecular Systems Biology
- Ammonia oxidation kinetics determine niche separation of nitrifying Archaea and Bacteria
- (2009) Willm Martens-Habbena et al. NATURE
- The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes
- (2008) F Meyer et al. BMC BIOINFORMATICS
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now