Evaluation of metatranscriptomic protocols and application to the study of freshwater microbial communities
出版年份 2014 全文链接
标题
Evaluation of metatranscriptomic protocols and application to the study of freshwater microbial communities
作者
关键词
-
出版物
Environmental Microbiology Reports
Volume 6, Issue 6, Pages 640-655
出版商
Wiley
发表日期
2014-05-28
DOI
10.1111/1758-2229.12180
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- MyTaxa: an advanced taxonomic classifier for genomic and metagenomic sequences
- (2014) Chengwei Luo et al. NUCLEIC ACIDS RESEARCH
- Synechococcus elongatus PCC 7942 is more tolerant to chromate as compared to Synechocystis sp. PCC 6803
- (2013) Alka Gupta et al. BIOMETALS
- Metagenomic insights into strategies of carbon conservation and unusual sulfur biogeochemistry in a hypersaline Antarctic lake
- (2013) Sheree Yau et al. ISME Journal
- Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes
- (2013) Mads Albertsen et al. NATURE BIOTECHNOLOGY
- Computational analysis of bacterial RNA-Seq data
- (2013) Ryan McClure et al. NUCLEIC ACIDS RESEARCH
- Pattern and synchrony of gene expression among sympatric marine microbial populations
- (2013) E. A. Ottesen et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Relationship between Abundance and Specific Activity of Bacterioplankton in Open Ocean Surface Waters
- (2012) Dana E. Hunt et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Technical and biological variance structure in mRNA-Seq data: life in the real world
- (2012) Ann L Oberg et al. BMC GENOMICS
- Diel gene expression profiles of a phosphorus limited mountain lake using metatranscriptomics
- (2012) Maria Vila-Costa et al. ENVIRONMENTAL MICROBIOLOGY
- Sizing up metatranscriptomics
- (2012) Mary Ann Moran et al. ISME Journal
- Expression patterns reveal niche diversification in a marine microbial assemblage
- (2012) Scott M Gifford et al. ISME Journal
- Lake microbial communities are resilient after a whole-ecosystem disturbance
- (2012) Ashley Shade et al. ISME Journal
- Direct Comparisons of Illumina vs. Roche 454 Sequencing Technologies on the Same Microbial Community DNA Sample
- (2012) Chengwei Luo et al. PLoS One
- Phylogenomics of Prokaryotic Ribosomal Proteins
- (2012) Natalya Yutin et al. PLoS One
- Statistical methods for identifying differentially expressed genes in RNA-Seq experiments
- (2012) Zhide Fang et al. Cell and Bioscience
- Efficient and robust RNA-seq process for cultured bacteria and complex community transcriptomes
- (2012) Georgia Giannoukos et al. GENOME BIOLOGY
- The Rare Bacterial Biosphere
- (2011) Carlos Pedrós-Alió Annual Review of Marine Science
- Metagenomic Insights into the Evolution, Function, and Complexity of the Planktonic Microbial Community of Lake Lanier, a Temperate Freshwater Ecosystem
- (2011) Seungdae Oh et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- GC-Content Normalization for RNA-Seq Data
- (2011) Davide Risso et al. BMC BIOINFORMATICS
- High-throughput single-cell sequencing identifies photoheterotrophs and chemoautotrophs in freshwater bacterioplankton
- (2011) Manuel Martinez-Garcia et al. ISME Journal
- Metatranscriptomic analysis of autonomously collected and preserved marine bacterioplankton
- (2011) Elizabeth A Ottesen et al. ISME Journal
- A Guide to the Natural History of Freshwater Lake Bacteria
- (2011) R. J. Newton et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- Unsupervised discovery of microbial population structure within metagenomes using nucleotide base composition
- (2011) Isaam Saeed et al. NUCLEIC ACIDS RESEARCH
- Activity of abundant and rare bacteria in a coastal ocean
- (2011) B. J. Campbell et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Community transcriptomics reveals universal patterns of protein sequence conservation in natural microbial communities
- (2011) Frank J Stewart et al. GENOME BIOLOGY
- Identifying biologically relevant differences between metagenomic communities
- (2010) Donovan H. Parks et al. BIOINFORMATICS
- Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments
- (2010) James H Bullard et al. BMC BIOINFORMATICS
- Spatial patterns and light-driven variation of microbial population gene expression in surface waters of the oligotrophic open ocean
- (2010) Ian Hewson et al. ENVIRONMENTAL MICROBIOLOGY
- Replicate or lie
- (2010) James I. Prosser ENVIRONMENTAL MICROBIOLOGY
- Metatranscriptomic analysis of ammonia-oxidizing organisms in an estuarine bacterioplankton assemblage
- (2010) James T Hollibaugh et al. ISME Journal
- Integrated metatranscriptomic and metagenomic analyses of stratified microbial assemblages in the open ocean
- (2010) Yanmei Shi et al. ISME Journal
- Development and quantitative analyses of a universal rRNA-subtraction protocol for microbial metatranscriptomics
- (2010) Frank J Stewart et al. ISME Journal
- Quantitative analysis of a deeply sequenced marine microbial metatranscriptome
- (2010) Scott M Gifford et al. ISME Journal
- Culture-Dependent and Independent Analyses of the Microbial Communities Inhabiting the Giant Duckweed (Spirodela polyrrhiza) Rhizoplane and Isolation of a Variety of Rarely Cultivated Organisms within the Phylum Verrucomicrobia
- (2010) Hiroaki Matsuzawa et al. MICROBES AND ENVIRONMENTS
- Validation of two ribosomal RNA removal methods for microbial metatranscriptomics
- (2010) Shaomei He et al. NATURE METHODS
- Biases in Illumina transcriptome sequencing caused by random hexamer priming
- (2010) Kasper D. Hansen et al. NUCLEIC ACIDS RESEARCH
- Ab initio gene identification in metagenomic sequences
- (2010) Wenhan Zhu et al. NUCLEIC ACIDS RESEARCH
- Dormancy contributes to the maintenance of microbial diversity
- (2010) S. E. Jones et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Differential expression analysis for sequence count data
- (2010) Simon Anders et al. GENOME BIOLOGY
- Phylum Verrucomicrobia representatives share a compartmentalized cell plan with members of bacterial phylum Planctomycetes
- (2009) Kuo-Chang Lee et al. BMC MICROBIOLOGY
- Comparative day/night metatranscriptomic analysis of microbial communities in the North Pacific subtropical gyre
- (2009) Rachel S. Poretsky et al. ENVIRONMENTAL MICROBIOLOGY
- Metagenomic approach studying the taxonomic and functional diversity of the bacterial community in a mesotrophic lake (Lac du Bourget - France)
- (2009) Didier Debroas et al. ENVIRONMENTAL MICROBIOLOGY
- Transporter genes expressed by coastal bacterioplankton in response to dissolved organic carbon
- (2009) Rachel S. Poretsky et al. ENVIRONMENTAL MICROBIOLOGY
- Ecological Genomics of Marine Picocyanobacteria
- (2009) D. J. Scanlan et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- A Parsimony Approach to Biological Pathway Reconstruction/Inference for Genomes and Metagenomes
- (2009) Yuzhen Ye et al. PLoS Computational Biology
- Community-wide analysis of microbial genome sequence signatures
- (2009) Gregory J Dick et al. GENOME BIOLOGY
- Transcription factor control of growth rate dependent genes in Saccharomyces cerevisiae: A three factor design
- (2008) Alessandro Fazio et al. BMC GENOMICS
- Global Responses of Methanococcus maripaludis to Specific Nutrient Limitations and Growth Rate
- (2008) E. L. Hendrickson et al. JOURNAL OF BACTERIOLOGY
- Simultaneous Assessment of Soil Microbial Community Structure and Function through Analysis of the Meta-Transcriptome
- (2008) Tim Urich et al. PLoS One
- Detection of Large Numbers of Novel Sequences in the Metatranscriptomes of Complex Marine Microbial Communities
- (2008) Jack A. Gilbert et al. PLoS One
- Microbial community gene expression in ocean surface waters
- (2008) J. Frias-Lopez et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Microbial Engines That Drive Earth's Biogeochemical Cycles
- (2008) P. G. Falkowski et al. SCIENCE
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