Quantitative imaging of cancer in the postgenomic era: Radio(geno)mics, deep learning, and habitats

Incidence of High-Risk Radiologic Features in Patients Without Local Recurrence After Stereotactic Ablative Radiation Therapy for Early-Stage Non-Small Cell Lung Cancer

(2018) M.I. Ronden et al.   INTERNATIONAL JOURNAL OF RADIATION ONCOLOGY BIOLOGY PHYSICS

Using Pretreatment Radiomics and Delta-Radiomics Features to Predict Non–Small Cell Lung Cancer Patient Outcomes

(2017) X. Fave et al.   INTERNATIONAL JOURNAL OF RADIATION ONCOLOGY BIOLOGY PHYSICS

Multiparametric MRI of the breast: A review

(2017) Maria Adele Marino et al.   JOURNAL OF MAGNETIC RESONANCE IMAGING

Diffusion radiomics analysis of intratumoral heterogeneity in a murine prostate cancer model following radiotherapy: Pixelwise correlation with histology

(2017) Yu-Chun Lin et al.   JOURNAL OF MAGNETIC RESONANCE IMAGING

Automation of pattern recognition analysis of dynamic contrast-enhanced MRI data to characterize intratumoral vascular heterogeneity

(2017) SoHyun Han et al.   MAGNETIC RESONANCE IN MEDICINE

Efficient multi-scale 3D CNN with fully connected CRF for accurate brain lesion segmentation

(2017) Konstantinos Kamnitsas et al.   MEDICAL IMAGE ANALYSIS

Standardizing CT lung density measure across scanner manufacturers

(2017) Huaiyu Heather Chen-Mayer et al.   MEDICAL PHYSICS

Intrinsic dependencies of CT radiomic features on voxel size and number of gray levels

(2017) Muhammad Shafiq-ul-Hassan et al.   MEDICAL PHYSICS

Precision of quantitative computed tomography texture analysis using image filtering

(2017) Koichiro Yasaka et al.   MEDICINE

BrainNetCNN: Convolutional neural networks for brain networks; towards predicting neurodevelopment

(2017) Jeremy Kawahara et al.   NEUROIMAGE

Deep learning predictions of survival based on MRI in amyotrophic lateral sclerosis

(2017) Hannelore K. van der Burgh et al.   NeuroImage-Clinical

TumourMetrics: a comprehensive clinical solution for the standardization of DCE-MRI analysis in research and routine use

(2017) Shih-Li Chao et al.   QUANTITATIVE IMAGING IN MEDICINE AND SURGERY

Harmonizing the pixel size in retrospective computed tomography radiomics studies

(2017) Dennis Mackin et al.   PLoS One

Predictive radiogenomics modeling of EGFR mutation status in lung cancer

(2017) Olivier Gevaert et al.   Scientific Reports

Delta-radiomics features for the prediction of patient outcomes in non–small cell lung cancer

(2017) Xenia Fave et al.   Scientific Reports

Associations between radiologist-defined semantic and automatically computed radiomic features in non-small cell lung cancer

(2017) Stephen S. F. Yip et al.   Scientific Reports

Deep Learning based Radiomics (DLR) and its usage in noninvasive IDH1 prediction for low grade glioma

(2017) Zeju Li et al.   Scientific Reports

Delineation of Tumor Habitats based on Dynamic Contrast Enhanced MRI

(2017) Yu-Cherng Channing Chang et al.   Scientific Reports

Deep Learning for Fully-Automated Localization and Segmentation of Rectal Cancer on Multiparametric MR

(2017) Stefano Trebeschi et al.   Scientific Reports

A Fully-Automatic Multiparametric Radiomics Model: Towards Reproducible and Prognostic Imaging Signature for Prediction of Overall Survival in Glioblastoma Multiforme

(2017) Qihua Li et al.   Scientific Reports

Statistical Issues in Testing Conformance with the Quantitative Imaging Biomarker Alliance (QIBA) Profile Claims

(2016) Nancy A. Obuchowski et al.   ACADEMIC RADIOLOGY

PET and MRI: Is the Whole Greater than the Sum of Its Parts?

(2016) Robert J. Gillies et al.   CANCER RESEARCH

Decoding Intratumoral Heterogeneity of Breast Cancer by Multiparametric In Vivo Imaging: A Translational Study

(2016) Jennifer Schmitz et al.   CANCER RESEARCH

Radiological Image Traits Predictive of Cancer Status in Pulmonary Nodules

(2016) Ying Liu et al.   CLINICAL CANCER RESEARCH

Pulmonary Nodule Classification with Deep Convolutional Neural Networks on Computed Tomography Images

(2016) Wei Li et al.   Computational and Mathematical Methods in Medicine

Lung Pattern Classification for Interstitial Lung Diseases Using a Deep Convolutional Neural Network

(2016) Marios Anthimopoulos et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

Pulmonary Nodule Detection in CT Images: False Positive Reduction Using Multi-View Convolutional Networks

(2016) Arnaud Arindra Adiyoso Setio et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

Fast Convolutional Neural Network Training Using Selective Data Sampling: Application to Hemorrhage Detection in Color Fundus Images

(2016) Mark J. J. P. van Grinsven et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

Improving Computer-Aided Detection Using_newlineConvolutional Neural Networks and Random View Aggregation

(2016) Holger R. Roth et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

Deep Convolutional Neural Networks for Computer-Aided Detection: CNN Architectures, Dataset Characteristics and Transfer Learning

(2016) Hoo-Chang Shin et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

A Comparison of Lung Nodule Segmentation Algorithms: Methods and Results from a Multi-institutional Study

(2016) Jayashree Kalpathy-Cramer et al.   JOURNAL OF DIGITAL IMAGING

Identifying spatial imaging biomarkers of glioblastoma multiforme for survival group prediction

(2016) Mu Zhou et al.   JOURNAL OF MAGNETIC RESONANCE IMAGING

Multi-scale deep networks and regression forests for direct bi-ventricular volume estimation

(2016) Xiantong Zhen et al.   MEDICAL IMAGE ANALYSIS

MRI texture features as biomarkers to predict MGMT methylation status in glioblastomas

(2016) Panagiotis Korfiatis et al.   MEDICAL PHYSICS

Automated detection of pulmonary nodules in PET/CT images: Ensemble false-positive reduction using a convolutional neural network technique

(2016) Atsushi Teramoto et al.   MEDICAL PHYSICS

CT Features Associated with Epidermal Growth Factor Receptor Mutation Status in Patients with Lung Adenocarcinoma

(2016) Ying Liu et al.   RADIOLOGY

Quantitative Features of Liver Lesions, Lung Nodules, and Renal Stones at Multi–Detector Row CT Examinations: Dependency on Radiation Dose and Reconstruction Algorithm

(2016) Justin Solomon et al.   RADIOLOGY

Interobserver Reproducibility of the PI-RADS Version 2 Lexicon: A Multicenter Study of Six Experienced Prostate Radiologists

(2016) Andrew B. Rosenkrantz et al.   RADIOLOGY

Radiomics: Images Are More than Pictures, They Are Data

(2016) Robert J. Gillies et al.   RADIOLOGY

The Potential of Radiomic-Based Phenotyping in Precision Medicine

(2016) Hugo J. W. L. Aerts   JAMA Oncology

Metabolism and Its Sequelae in Cancer Evolution and Therapy

(2015) Robert J. Gillies et al.   CANCER JOURNAL

Impact of Metabolic Heterogeneity on Tumor Growth, Invasion, and Treatment Outcomes

(2015) M. Robertson-Tessi et al.   CANCER RESEARCH

Multivariate modelling of prostate cancer combining magnetic resonance derived T2, diffusion, dynamic contrast-enhanced and spectroscopic parameters

(2015) S. F. Riches et al.   EUROPEAN RADIOLOGY

Haralick texture analysis of prostate MRI: utility for differentiating non-cancerous prostate from prostate cancer and differentiating prostate cancers with different Gleason scores

(2015) Andreas Wibmer et al.   EUROPEAN RADIOLOGY

The radiogenomic risk score stratifies outcomes in a renal cell cancer phase 2 clinical trial

(2015) Neema Jamshidi et al.   EUROPEAN RADIOLOGY

A computed tomography radiogenomic biomarker predicts microvascular invasion and clinical outcomes in hepatocellular carcinoma

(2015) Sudeep Banerjee et al.   HEPATOLOGY

Transfer Learning Improves Supervised Image Segmentation Across Imaging Protocols

(2015) Annegreet van Opbroek et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

Measuring Computed Tomography Scanner Variability of Radiomics Features

(2015) Dennis Mackin et al.   INVESTIGATIVE RADIOLOGY

Heterogeneity in intratumoral regions with rapid gadolinium washout correlates with estrogen receptor status and nodal metastasis

(2015) Baishali Chaudhury et al.   JOURNAL OF MAGNETIC RESONANCE IMAGING

Predicting adenocarcinoma recurrence using computational texture models of nodule components in lung CT

(2015) Adrien Depeursinge et al.   MEDICAL PHYSICS

Can radiomics features be reproducibly measured from CBCT images for patients with non-small cell lung cancer?

(2015) Xenia Fave et al.   MEDICAL PHYSICS

Evaluation of tumor-derived MRI-texture features for discrimination of molecular subtypes and prediction of 12-month survival status in glioblastoma

(2015) Dalu Yang et al.   MEDICAL PHYSICS

ibex: An open infrastructure software platform to facilitate collaborative work in radiomics

(2015) Lifei Zhang et al.   MEDICAL PHYSICS

Deep learning

(2015) Yann LeCun et al.   NATURE

A radiomics model from joint FDG-PET and MRI texture features for the prediction of lung metastases in soft-tissue sarcomas of the extremities

(2015) M Vallières et al.   PHYSICS IN MEDICINE AND BIOLOGY

Automatic classification of prostate cancer Gleason scores from multiparametric magnetic resonance images

(2015) Duc Fehr et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Segmentation and Image Analysis of Abnormal Lungs at CT: Current Approaches, Challenges, and Future Trends

(2015) Awais Mansoor et al.   RADIOGRAPHICS

Glioblastoma Multiforme: Exploratory Radiogenomic Analysis by Using Quantitative Image Features

(2015) Olivier Gevaert et al.   RADIOLOGY

Metrology Standards for Quantitative Imaging Biomarkers

(2015) Daniel C. Sullivan et al.   RADIOLOGY

The Radiogenomic Risk Score: Construction of a Prognostic Quantitative, Noninvasive Image-based Molecular Assay for Renal Cell Carcinoma

(2015) Neema Jamshidi et al.   RADIOLOGY

Magnetic resonance image features identify glioblastoma phenotypic subtypes with distinct molecular pathway activities

(2015) Haruka Itakura et al.   Science Translational Medicine

Quantitative Computed Tomographic Descriptors Associate Tumor Shape Complexity and Intratumor Heterogeneity with Prognosis in Lung Adenocarcinoma

(2015) Olya Grove et al.   PLoS One

Predicting Response to Neoadjuvant Chemotherapy with PET Imaging Using Convolutional Neural Networks

(2015) Petros-Pavlos Ypsilantis et al.   PLoS One

Spatial Habitat Features Derived from Multiparametric Magnetic Resonance Imaging Data Are Associated with Molecular Subtype and 12-Month Survival Status in Glioblastoma Multiforme

(2015) Joonsang Lee et al.   PLoS One

Temporal Heterogeneity in Blood Supply in Human Tumor Xenografts

(2015) Kjetil G. Brurberg et al.   NEOPLASIA

Imaging Intratumor Heterogeneity: Role in Therapy Response, Resistance, and Clinical Outcome

(2014) J. P. B. O'Connor et al.   CLINICAL CANCER RESEARCH

A review on segmentation of positron emission tomography images

(2014) Brent Foster et al.   COMPUTERS IN BIOLOGY AND MEDICINE

Rotation–Covariant Texture Learning Using Steerable Riesz Wavelets

(2014) Adrien Depeursinge et al.   IEEE TRANSACTIONS ON IMAGE PROCESSING

Predicting Visual Semantic Descriptive Terms From Radiological Image Data: Preliminary Results With Liver Lesions in CT

(2014) Adrien Depeursinge et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

Test–Retest Reproducibility Analysis of Lung CT Image Features

(2014) Yoganand Balagurunathan et al.   JOURNAL OF DIGITAL IMAGING

Intratumoral Heterogeneity of Breast Cancer Xenograft Models: Texture Analysis of Diffusion-Weighted MR Imaging

(2014) Bo La Yun et al.   KOREAN JOURNAL OF RADIOLOGY

ADC texture-An imaging biomarker for high-grade glioma?

(2014) Patrik Brynolfsson et al.   MEDICAL PHYSICS

Hierarchical feature representation and multimodal fusion with deep learning for AD/MCI diagnosis

(2014) Heung-Il Suk et al.   NEUROIMAGE

Behind the Numbers: Decoding Molecular Phenotypes with Radiogenomics—Guiding Principles and Technical Considerations

(2014) Michael D. Kuo et al.   RADIOLOGY

The emerging science of quantitative imaging biomarkers terminology and definitions for scientific studies and regulatory submissions

(2014) Larry G Kessler et al.   STATISTICAL METHODS IN MEDICAL RESEARCH

Mapping Tumor Hypoxia In Vivo Using Pattern Recognition of Dynamic Contrast-enhanced MRI Data

(2014) Radka Stoyanova et al.   Translational Oncology

The Quantitative Imaging Network: NCI's Historical Perspective and Planned Goals

(2014) Laurence P. Clarke et al.   Translational Oncology

Automated Tracking of Quantitative Assessments of Tumor Burden in Clinical Trials

(2014) Daniel L. Rubin et al.   Translational Oncology

Radiologically Defined Ecological Dynamics and Clinical Outcomes in Glioblastoma Multiforme: Preliminary Results

(2014) Mu Zhou et al.   Translational Oncology

Decoding tumour phenotype by noninvasive imaging using a quantitative radiomics approach

(2014) Hugo J. W. L. Aerts et al.   Nature Communications

Integrative Radiogenomic Profiling of Squamous Cell Lung Cancer

(2013) M. E. Abazeed et al.   CANCER RESEARCH

Visual Interpretation with Three-Dimensional Annotations (VITA): Three-Dimensional Image Interpretation Tool for Radiological Reporting

(2013) Sharmili Roy et al.   JOURNAL OF DIGITAL IMAGING

Influence of tumour micro-environment heterogeneity on therapeutic response

(2013) Melissa R. Junttila et al.   NATURE

Quantitative Imaging in Cancer Evolution and Ecology

(2013) Robert A. Gatenby et al.   RADIOLOGY

Illuminating Radiogenomic Characteristics of Glioblastoma Multiforme through Integration of MR Imaging, Messenger RNA Expression, and DNA Copy Number Variation

(2013) Neema Jamshidi et al.   RADIOLOGY

Radiogenomics of Clear Cell Renal Cell Carcinoma: Associations between CT Imaging Features and Mutations

(2013) Christoph A. Karlo et al.   RADIOLOGY

Radiomics: Extracting more information from medical images using advanced feature analysis

(2012) Philippe Lambin et al.   EUROPEAN JOURNAL OF CANCER

Quantitative Assessment of Heterogeneity in Tumor Metabolism Using FDG-PET

(2012) Dennis Vriens et al.   INTERNATIONAL JOURNAL OF RADIATION ONCOLOGY BIOLOGY PHYSICS

Radiomics: the process and the challenges

(2012) Virendra Kumar et al.   MAGNETIC RESONANCE IMAGING

Quantifying the margin sharpness of lesions on radiological images for content-based image retrieval

(2012) Jiajing Xu et al.   MEDICAL PHYSICS

Advanced Ovarian Cancer: Multiparametric MR Imaging Demonstrates Response- and Metastasis-specific Effects

(2012) Evis Sala et al.   RADIOLOGY

Non–Small Cell Lung Cancer: Identifying Prognostic Imaging Biomarkers by Leveraging Public Gene Expression Microarray Data—Methods and Preliminary Results

(2012) Olivier Gevaert et al.   RADIOLOGY

A review of atlas-based segmentation for magnetic resonance brain images

(2011) Mariano Cabezas et al.   COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE

A Comprehensive Descriptor of Shape: Method and Application to Content-Based Retrieval of Similar Appearing Lesions in Medical Images

(2011) Jiajing Xu et al.   JOURNAL OF DIGITAL IMAGING

Dynamic contrast-enhanced-MRI of tumor hypoxia

(2011) Tormod A.M. Egeland et al.   MAGNETIC RESONANCE IN MEDICINE

The Lung Image Database Consortium (LIDC) and Image Database Resource Initiative (IDRI): A Completed Reference Database of Lung Nodules on CT Scans

(2011) Samuel G. Armato et al.   MEDICAL PHYSICS

Molecular mechanisms and clinical applications of angiogenesis

(2011) Peter Carmeliet et al.   NATURE

Radiogenomic Mapping of Edema/Cellular Invasion MRI-Phenotypes in Glioblastoma Multiforme

(2011) Pascal O. Zinn et al.   PLoS One

Phenotyping of Tumor Biology in Patients by Multimodality Multiparametric Imaging: Relationship of Microcirculation,  v 3 Expression, and Glucose Metabolism

(2010) S. Metz et al.   JOURNAL OF NUCLEAR MEDICINE

A review of segmentation methods in short axis cardiac MR images

(2010) Caroline Petitjean et al.   MEDICAL IMAGE ANALYSIS

Adaptive Therapy

(2009) R. A. Gatenby et al.   CANCER RESEARCH

Radiogenomics: Creating a link between molecular diagnostics and diagnostic imaging

(2009) Aaron M. Rutman et al.   EUROPEAN JOURNAL OF RADIOLOGY

Annotation and Image Markup: Accessing and Interoperating with the Semantic Content in Medical Imaging

(2009) Daniel L. Rubin et al.   IEEE INTELLIGENT SYSTEMS

The caBIG™ Annotation and Image Markup Project

(2009) David S. Channin et al.   JOURNAL OF DIGITAL IMAGING

Viable tumor tissue detection in murine metastatic breast cancer by whole-body MRI and multispectral analysis

(2009) Kai H. Barck et al.   MAGNETIC RESONANCE IN MEDICINE

Relationships between Cycling Hypoxia, HIF-1, Angiogenesis and Oxidative Stress

(2009) Mark W. Dewhirst   RADIATION RESEARCH

The Use of Magnetic Resonance Imaging to Noninvasively Detect Genetic Signatures in Oligodendroglioma

(2008) R. Brown et al.   CLINICAL CANCER RESEARCH

New response evaluation criteria in solid tumours: Revised RECIST guideline (version 1.1)

(2008) E.A. Eisenhauer et al.   EUROPEAN JOURNAL OF CANCER

An Exploratory Study Into the Role of Dynamic Contrast-Enhanced Magnetic Resonance Imaging or Perfusion Computed Tomography for Detection of Intratumoral Hypoxia in Head-and-Neck Cancer

(2008) Kate Newbold et al.   INTERNATIONAL JOURNAL OF RADIATION ONCOLOGY BIOLOGY PHYSICS

Classification of Breast Masses Using Selected Shape, Edge-sharpness, and Texture Features with Linear and Kernel-based Classifiers

(2008) Tingting Mu et al.   JOURNAL OF DIGITAL IMAGING

Quantification of viable tumor microvascular characteristics by multispectral analysis

(2008) Leanne R. Berry et al.   MAGNETIC RESONANCE IN MEDICINE

Molecular and functional imaging of breast cancer

(2008) K. Glunde et al.   NMR IN BIOMEDICINE