Genome-wide analysis of the pentatricopeptide repeat gene family in different maize genomes and its important role in kernel development

MaizeDek37Encodes a P-type PPR Protein That Affectscis-Splicing of Mitochondrialnad2Intron 1 and Seed Development

(2018) Dawei Dai et al.   GENETICS

Defective Kernel 39 encodes a PPR protein required for seed development in maize

(2018) Xiaojie Li et al.   Journal of Integrative Plant Biology

MaizeDek37Encodes a P-type PPR Protein That Affectscis-Splicing of Mitochondrialnad2Intron 1 and Seed Development

(2018) Dawei Dai et al.   GENETICS

Editing of Mitochondrial Transcripts nad3 and cox2 by Dek10 Is Essential for Mitochondrial Function and Maize Plant Development

(2017) Weiwei Qi et al.   GENETICS

PDM3, a pentatricopeptide repeat-containing protein, affects chloroplast development

(2017) Jian Zhang et al.   JOURNAL OF EXPERIMENTAL BOTANY

A pentatricopeptide repeat protein restores nap cytoplasmic male sterility in Brassica napus

(2017) Zhi Liu et al.   JOURNAL OF EXPERIMENTAL BOTANY

EMPTY PERICARP11 serves as a factor for splicing of mitochondrial nad1 intron and is required to ensure proper seed development in maize

(2017) Xuemei Ren et al.   JOURNAL OF EXPERIMENTAL BOTANY

Dek35 Encodes a PPR Protein that Affects cis -Splicing of Mitochondrial nad4 Intron 1 and Seed Development in Maize

(2017) Xinze Chen et al.   Molecular Plant

The Mitochondrion-Targeted PENTATRICOPEPTIDE REPEAT78 Protein Is Required for nad5 Mature mRNA Stability and Seed Development in Maize

(2017) Ya-Feng Zhang et al.   Molecular Plant

E+ subgroup PPR protein defective kernel 36 is required for multiple mitochondrial transcripts editing and seed development in maize and Arabidopsis

(2017) Gang Wang et al.   NEW PHYTOLOGIST

The Pentratricopeptide Repeat Protein Pigment-Defective Mutant2 is Involved in the Regulation of Chloroplast Development and Chloroplast Gene Expression in Arabidopsis

(2017) Liang Du et al.   PLANT AND CELL PHYSIOLOGY

Emp10 encodes a mitochondrial PPR protein that affects the cis -splicing of nad2 intron 1 and seed development in maize

(2017) Manjun Cai et al.   PLANT JOURNAL

A protein with an unusually short PPR domain, MEF8, affects editing at over 60 Arabidopsis mitochondrial C targets of RNA editing

(2017) Michael F. Diaz et al.   PLANT JOURNAL

OsPPR6, a pentatricopeptide repeat protein involved in editing and splicing chloroplast RNA, is required for chloroplast biogenesis in rice

(2017) Jianpeng Tang et al.   PLANT MOLECULAR BIOLOGY

Multiple PPR protein interactions are involved in the RNA editing system inArabidopsismitochondria and plastids

(2017) Nuria Andrés-Colás et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Characterization and fine mapping of qkc7.03: a major locus for kernel cracking in maize

(2017) Mingtao Yang et al.   THEORETICAL AND APPLIED GENETICS

Candidate Loci for Yield-Related Traits in Maize Revealed by a Combination of MetaQTL Analysis and Regional Association Mapping

(2017) Lin Chen et al.   Frontiers in Plant Science

Editing of Mitochondrial Transcripts nad3 and cox2 by Dek10 Is Essential for Mitochondrial Function and Maize Plant Development

(2017) Weiwei Qi et al.   GENETICS

Genome-wide investigation and expression analyses of the pentatricopeptide repeat protein gene family in foxtail millet

(2016) Jia-Ming Liu et al.   BMC GENOMICS

Mitochondrial Function and Maize Kernel Development Requires Dek2, a Pentatricopeptide Repeat Protein Involved in nad1 mRNA Splicing

(2016) Weiwei Qi et al.   GENETICS

Pentatricopeptide repeat proteins in maize

(2016) Kaifa Wei et al.   MOLECULAR BREEDING

Draft Assembly of Elite Inbred Line PH207 Provides Insights into Genomic and Transcriptome Diversity in Maize

(2016) Candice N. Hirsch et al.   PLANT CELL

The E-Subgroup Pentatricopeptide Repeat Protein Family in Arabidopsis thaliana and Confirmation of the Responsiveness PPR96 to Abiotic Stresses

(2016) Jia-Ming Liu et al.   Frontiers in Plant Science

Mitochondrial Function and Maize Kernel Development Requires Dek2, a Pentatricopeptide Repeat Protein Involved in nad1 mRNA Splicing

(2016) Weiwei Qi et al.   GENETICS

Genome-wide analysis of the IQD gene family in maize

(2015) Ronghao Cai et al.   MOLECULAR GENETICS AND GENOMICS

Crucial roles of the pentatricopeptide repeat protein SOAR1 in Arabidopsis response to drought, salt and cold stresses

(2015) Shang-Chuan Jiang et al.   PLANT MOLECULAR BIOLOGY

GSDS 2.0: an upgraded gene feature visualization server

(2014) Bo Hu et al.   BIOINFORMATICS

Insights into the Maize Pan-Genome and Pan-Transcriptome

(2014) C. N. Hirsch et al.   PLANT CELL

Small kernel 1encodes a pentatricopeptide repeat protein required for mitochondrialnad7transcript editing and seed development in maize(Zea mays)and rice(Oryza sativa)

(2014) Xiao-Jie Li et al.   PLANT JOURNAL

Genome Wide Association Studies Using a New Nonparametric Model Reveal the Genetic Architecture of 17 Agronomic Traits in an Enlarged Maize Association Panel

(2014) Ning Yang et al.   PLoS Genetics

Genome-wide identification and expression profiling of ankyrin-repeat gene family in maize

(2013) Haiyang Jiang et al.   DEVELOPMENT GENES AND EVOLUTION

Empty Pericarp5 Encodes a Pentatricopeptide Repeat Protein That Is Required for Mitochondrial RNA Editing and Seed Development in Maize

(2013) Y.-J. Liu et al.   PLANT CELL

Architecture of the PPR gene family in the mossPhyscomitrella patens

(2013) Mamoru Sugita et al.   RNA Biology

The Rf and Rf-like PPR in higher plants, a fast-evolving subclass of PPR genes

(2013) Jennifer Dahan et al.   RNA Biology

RNA sequencing reveals the complex regulatory network in the maize kernel

(2013) Junjie Fu et al.   Nature Communications

PPR8522 encodes a chloroplast-targeted pentatricopeptide repeat protein necessary for maize embryogenesis and vegetative development

(2012) Davide Sosso et al.   JOURNAL OF EXPERIMENTAL BOTANY

PPR2263, a DYW-Subgroup Pentatricopeptide Repeat Protein, Is Required for Mitochondrial nad5 and cob Transcript Editing, Mitochondrion Biogenesis, and Maize Growth

(2012) D. Sosso et al.   PLANT CELL

Functional disruption of the pentatricopeptide protein SLG1 affects mitochondrial RNA editing, plant development, and responses to abiotic stresses in Arabidopsis

(2012) Hui Yuan et al.   PLANT JOURNAL

Phytozome: a comparative platform for green plant genomics

(2011) David M. Goodstein et al.   NUCLEIC ACIDS RESEARCH

HMMER web server: interactive sequence similarity searching

(2011) R. D. Finn et al.   NUCLEIC ACIDS RESEARCH

Genome-wide analysis of the beta-glucosidase gene family in maize (Zea mays L. var B73)

(2011) Gracia Gómez-Anduro et al.   PLANT MOLECULAR BIOLOGY

Overexpression of the mitochondrial PPR40 gene improves salt tolerance in Arabidopsis

(2011) Laura Zsigmond et al.   PLANT SCIENCE

-Mediated T- Transcript Accumulation Coincides with a Pentatricopeptide Repeat Cluster on Maize Chromosome 2L

(2011) Julie Meyer et al.   Plant Genome

Genome-wide patterns of genetic variation among elite maize inbred lines

(2010) Jinsheng Lai et al.   NATURE GENETICS

The pentatricopeptide repeat (PPR) gene family, a tremendous resource for plant phylogenetic studies

(2009) Yao-Wu Yuan et al.   NEW PHYTOLOGIST

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

The B73 Maize Genome: Complexity, Diversity, and Dynamics

(2009) P. S. Schnable et al.   SCIENCE

Fertilization and early seed formation

(2008) Christian Dumas et al.   COMPTES RENDUS BIOLOGIES

On the Expansion of the Pentatricopeptide Repeat Gene Family in Plants

(2008) N. O'Toole et al.   MOLECULAR BIOLOGY AND EVOLUTION

Pentatricopeptide repeat proteins: a socket set for organelle gene expression

(2008) C SCHMITZLINNEWEBER et al.   TRENDS IN PLANT SCIENCE