A draft genome of the striped catfish, Pangasianodon hypophthalmus, for comparative analysis of genes relevant to development and a resource for aquaculture improvement
出版年份 2018 全文链接
标题
A draft genome of the striped catfish, Pangasianodon hypophthalmus, for comparative analysis of genes relevant to development and a resource for aquaculture improvement
作者
关键词
-
出版物
BMC GENOMICS
Volume 19, Issue 1, Pages -
出版商
Springer Nature America, Inc
发表日期
2018-10-05
DOI
10.1186/s12864-018-5079-x
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Insights into teleost sex determination from the Seriola dorsalis genome assembly
- (2018) Catherine M. Purcell et al. BMC GENOMICS
- Genome-wide identification, phylogeny and expressional profile of the Sox gene family in channel catfish ( Ictalurus punctatus )
- (2018) Shiyong Zhang et al. Comparative Biochemistry and Physiology D-Genomics & Proteomics
- Insulin-Like Growth Factor-Binding Proteins of Teleost Fishes
- (2018) Daniel Garcia de la Serrana et al. Frontiers in Endocrinology
- Vertebrate sex-determining genes play musical chairs
- (2016) Qiaowei Pan et al. COMPTES RENDUS BIOLOGIES
- Conservation ofHoxgene clusters in the self-fertilizing fishKryptolebias marmoratus(Cyprinodontiformes; Rivulidae)
- (2016) B.-M. Kim et al. JOURNAL OF FISH BIOLOGY
- MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets
- (2016) Sudhir Kumar et al. MOLECULAR BIOLOGY AND EVOLUTION
- Genomewide single nucleotide polymorphism discovery in Atlantic salmon (Salmo salar): validation in wild and farmed American and European populations
- (2016) J. M. Yáñez et al. Molecular Ecology Resources
- The Atlantic salmon genome provides insights into rediploidization
- (2016) Sigbjørn Lien et al. NATURE
- A Time-Calibrated Mitogenome Phylogeny of Catfish (Teleostei: Siluriformes)
- (2016) Ilias Kappas et al. PLoS One
- BRAKER1: Unsupervised RNA-Seq-Based Genome Annotation with GeneMark-ET and AUGUSTUS: Table 1.
- (2015) Katharina J. Hoff et al. BIOINFORMATICS
- BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
- (2015) Felipe A. Simão et al. BIOINFORMATICS
- A comprehensive analysis of teleost MHC class I sequences
- (2015) Unni Grimholt et al. BMC EVOLUTIONARY BIOLOGY
- The genetic architecture of growth and fillet traits in farmed Atlantic salmon (Salmo salar)
- (2015) Hsin Yuan Tsai et al. BMC GENETICS
- Epithelial Cadherin Determines Resistance to Infectious Pancreatic Necrosis Virus in Atlantic Salmon
- (2015) Thomas Moen et al. GENETICS
- Mapping and validation of a major QTL affecting resistance to pancreas disease (salmonid alphavirus) in Atlantic salmon (Salmo salar)
- (2015) S Gonen et al. HEREDITY
- The Pfam protein families database: towards a more sustainable future
- (2015) Robert D. Finn et al. NUCLEIC ACIDS RESEARCH
- Epithelial Cadherin Determines Resistance to Infectious Pancreatic Necrosis Virus in Atlantic Salmon
- (2015) Thomas Moen et al. GENETICS
- Exploring the climate change concerns of striped catfish producers in the Mekong Delta, Vietnam
- (2015) Anh Lam Nguyen et al. SpringerPlus
- Single nucleotide polymorphisms in theinsulin-like growth factor 1(IGF1) gene are associated with growth-related traits in farmed Atlantic salmon
- (2014) H. Y. Tsai et al. ANIMAL GENETICS
- Discovery of Gene Cluster for Mycosporine-Like Amino Acid Biosynthesis from Actinomycetales Microorganisms and Production of a Novel Mycosporine-Like Amino Acid by Heterologous Expression
- (2014) Kiyoko T. Miyamoto et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads
- (2014) Rei Kajitani et al. GENOME RESEARCH
- The genomic substrate for adaptive radiation in African cichlid fish
- (2014) David Brawand et al. NATURE
- The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates
- (2014) Camille Berthelot et al. Nature Communications
- NextClip: an analysis and read preparation tool for Nextera Long Mate Pair libraries
- (2013) Richard M. Leggett et al. BIOINFORMATICS
- Recent advances of genome mapping and marker-assisted selection in aquaculture
- (2013) Gen Hua Yue FISH AND FISHERIES
- Coelacanth genomes reveal signatures for evolutionary transition from water to land
- (2013) M. Nikaido et al. GENOME RESEARCH
- Detection of Quantitative Trait Loci (QTL) Related to Grilsing and Late Sexual Maturation in Atlantic Salmon (Salmo salar)
- (2013) Alejandro P. Gutierrez et al. MARINE BIOTECHNOLOGY
- The mitogenome of Pangasius sutchi (Teleostei, Siluriformes: Pangasiidae)
- (2013) Haipeng Zhao et al. Mitochondrial DNA
- Evolution of Ancient Functions in the Vertebrate Insulin-Like Growth Factor System Uncovered by Study of Duplicated Salmonid Fish Genomes
- (2013) Daniel J. Macqueen et al. MOLECULAR BIOLOGY AND EVOLUTION
- MitoFish and MitoAnnotator: A Mitochondrial Genome Database of Fish with an Accurate and Automatic Annotation Pipeline
- (2013) W. Iwasaki et al. MOLECULAR BIOLOGY AND EVOLUTION
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- (2013) K. Katoh et al. MOLECULAR BIOLOGY AND EVOLUTION
- The African coelacanth genome provides insights into tetrapod evolution
- (2013) Chris T. Amemiya et al. NATURE
- The zebrafish reference genome sequence and its relationship to the human genome
- (2013) Kerstin Howe et al. NATURE
- TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
- (2013) Daehwan Kim et al. GENOME BIOLOGY
- An Immune-Related Gene Evolved into the Master Sex-Determining Gene in Rainbow Trout, Oncorhynchus mykiss
- (2012) Ayaka Yano et al. CURRENT BIOLOGY
- Primitive Duplicate Hox Clusters in the European Eel's Genome
- (2012) Christiaan V. Henkel et al. PLoS One
- Multiple Sex-Associated Regions and a Putative Sex Chromosome in Zebrafish Revealed by RAD Mapping and Population Genomics
- (2012) Jennifer L. Anderson et al. PLoS One
- A Trans-Species Missense SNP in Amhr2 Is Associated with Sex Determination in the Tiger Pufferfish, Takifugu rubripes (Fugu)
- (2012) Takashi Kamiya et al. PLoS Genetics
- A fast, lock-free approach for efficient parallel counting of occurrences of k-mers
- (2011) Guillaume Marçais et al. BIOINFORMATICS
- Quality control and preprocessing of metagenomic datasets
- (2011) R. Schmieder et al. BIOINFORMATICS
- A dense SNP-based linkage map for Atlantic salmon (Salmo salar) reveals extended chromosome homeologies and striking differences in sex-specific recombination patterns
- (2011) Sigbjørn Lien et al. BMC GENOMICS
- Evolution of the Insulin-Like Growth Factor Binding Protein (IGFBP) Family
- (2011) Daniel Ocampo Daza et al. ENDOCRINOLOGY
- Using the Acropora digitifera genome to understand coral responses to environmental change
- (2011) Chuya Shinzato et al. NATURE
- The genome sequence of Atlantic cod reveals a unique immune system
- (2011) Bastiaan Star et al. NATURE
- Deep-ocean origin of the freshwater eels
- (2010) J. G. Inoue et al. Biology Letters
- Development of genomic resources in support of sequencing, assembly, and annotation of the catfish genome
- (2010) Zhanjiang Liu Comparative Biochemistry and Physiology D-Genomics & Proteomics
- Current status of farming practices of striped catfish, Pangasianodon hypophthalmus in the Mekong Delta, Vietnam
- (2009) Lam T. Phan et al. AQUACULTURE
- Comparative analysis of catfish BAC end sequences with the zebrafish genome
- (2009) Hong Liu et al. BMC GENOMICS
- Confirmation and fine-mapping of a major QTL for resistance to infectious pancreatic necrosis in Atlantic salmon (Salmo salar): population-level associations between markers and trait
- (2009) Thomas Moen et al. BMC GENOMICS
- Identification of the Major Sex-Determining Region of Turbot ( Scophthalmus maximus )
- (2009) Paulino Martínez et al. GENETICS
- JBrowse: A next-generation genome browser
- (2009) M. E. Skinner et al. GENOME RESEARCH
- The susceptibility of Atlantic salmon fry to freshwater infectious pancreatic necrosis is largely explained by a major QTL
- (2009) R D Houston et al. HEREDITY
- The evolution and maintenance of Hox gene clusters in vertebrates and the teleost-specific genome duplication
- (2009) Shigehiro Kuraku et al. INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY
- Zebrafish IGF Genes: Gene Duplication, Conservation and Divergence, and Novel Roles in Midline and Notochord Development
- (2009) Shuming Zou et al. PLoS One
- Patterns of use and exchange of genetic resources of the striped catfish Pangasianodonâhypophthalmus (Sauvage 1878)
- (2009) Thuy T. T. Nguyen Reviews in Aquaculture
- The C. savignyi genetic map and its integration with the reference sequence facilitates insights into chordate genome evolution
- (2008) M. M. Hill et al. GENOME RESEARCH
- Timing of Genome Duplications Relative to the Origin of the Vertebrates: Did Cyclostomes Diverge before or after?
- (2008) S. Kuraku et al. MOLECULAR BIOLOGY AND EVOLUTION
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