Evolution of Ancient Functions in the Vertebrate Insulin-Like Growth Factor System Uncovered by Study of Duplicated Salmonid Fish Genomes

Development Temperature Has Persistent Effects on Muscle Growth Responses in Gilthead Sea Bream

(2012) Daniel Garcia de la serrana et al.   PLoS One

Resolution of ray-finned fish phylogeny and timing of diversification

(2012) T. J. Near et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolution of the Insulin-Like Growth Factor Binding Protein (IGFBP) Family

(2011) Daniel Ocampo Daza et al.   ENDOCRINOLOGY

Circulating salmon 28- and 22-kDa insulin-like growth factor binding proteins (IGFBPs) are co-orthologs of IGFBP-1

(2011) Munetaka Shimizu et al.   GENERAL AND COMPARATIVE ENDOCRINOLOGY

Circulating salmon 41-kDa insulin-like growth factor binding protein (IGFBP) is not IGFBP-3 but an IGFBP-2 subtype

(2011) Munetaka Shimizu et al.   GENERAL AND COMPARATIVE ENDOCRINOLOGY

Growth and the regulation of myotomal muscle mass in teleost fish

(2011) I. A. Johnston et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

The parallel evolution of dwarfism in Arctic charr is accompanied by adaptive divergence in mTOR-pathway gene expression

(2011) DANIEL J. MACQUEEN et al.   MOLECULAR ECOLOGY

Positioning the expanded akirin gene family of Atlantic salmon within the transcriptional networks of myogenesis

(2010) Daniel J. Macqueen et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Toward the estimation of the absolute quality of individual protein structure models

(2010) Pascal Benkert et al.   BIOINFORMATICS

Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome

(2010) Jong S Leong et al.   BMC GENOMICS

Duplicated zebrafish insulin-like growth factor binding protein-5 genes with split functional domains: evidence for evolutionarily conserved IGF binding, nuclear localization, and transactivation activity

(2010) Wei Dai et al.   FASEB JOURNAL

A Newly Classified Vertebrate Calpain Protease, Directly Ancestral to CAPN1 and 2, Episodically Evolved a Restricted Physiological Function in Placental Mammals

(2010) Daniel J. Macqueen et al.   MOLECULAR BIOLOGY AND EVOLUTION

GUIDANCE: a web server for assessing alignment confidence scores

(2010) O. Penn et al.   NUCLEIC ACIDS RESEARCH

Salmonid genomes have a remarkably expanded akirin family, coexpressed with genes from conserved pathways governing skeletal muscle growth and catabolism

(2010) Daniel J. Macqueen et al.   PHYSIOLOGICAL GENOMICS

Transcriptional Regulation of the IGF Signaling Pathway by Amino Acids and Insulin-Like Growth Factors during Myogenesis in Atlantic Salmon

(2010) Neil I. Bower et al.   PLoS One

Perspectives in mammalian IGFBP-3 biology: local vs. systemic action

(2009) Paulette M. Yamada et al.   AMERICAN JOURNAL OF PHYSIOLOGY-CELL PHYSIOLOGY

The MIQE Guidelines: Minimum Information for Publication of Quantitative Real-Time PCR Experiments

(2009) S. A. Bustin et al.   CLINICAL CHEMISTRY

The evolutionary significance of ancient genome duplications

(2009) Yves Van de Peer et al.   NATURE REVIEWS GENETICS

Protinfo PPC: A web server for atomic level prediction of protein complexes

(2009) Weerayuth Kittichotirat et al.   NUCLEIC ACIDS RESEARCH

QMEAN server for protein model quality estimation

(2009) Pascal Benkert et al.   NUCLEIC ACIDS RESEARCH

Amplification efficiency: linking baseline and bias in the analysis of quantitative PCR data

(2009) J. M. Ruijter et al.   NUCLEIC ACIDS RESEARCH

IGFBP-5 regulates muscle cell differentiation by binding to IGF-II and switching on the IGF-II auto-regulation loop

(2008) Hongxia Ren et al.   JOURNAL OF CELL BIOLOGY

Switching to fast growth: the insulin-like growth factor (IGF) system in skeletal muscle of Atlantic salmon

(2008) N. I. Bower et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Differential Evolution of the 13 Atlantic Salmon Hox Clusters

(2008) S. Mungpakdee et al.   MOLECULAR BIOLOGY AND EVOLUTION

The amphioxus genome and the evolution of the chordate karyotype

(2008) Nicholas H. Putnam et al.   NATURE

IGFBP-4 is an inhibitor of canonical Wnt signalling required for cardiogenesis

(2008) Weidong Zhu et al.   NATURE

Turning a hobby into a job: How duplicated genes find new functions

(2008) Gavin C. Conant et al.   NATURE REVIEWS GENETICS

Duplication and Diversification of the Hypoxia-Inducible IGFBP-1 Gene in Zebrafish

(2008) Hiroyasu Kamei et al.   PLoS One

Duplication of the IGFBP-2 Gene in Teleost Fish: Protein Structure and Functionality Conservation and Gene Expression Divergence

(2008) Jianfeng Zhou et al.   PLoS One

Phylogeny-Aware Gap Placement Prevents Errors in Sequence Alignment and Evolutionary Analysis

(2008) A. Loytynoja et al.   SCIENCE