Copper-induced increased expression of genes involved in photosynthesis, carotenoid synthesis and C assimilation in the marine alga Ulva compressa

Effect of elevated temperature on the physiological responses of marine Chlorella strains from different latitudes

(2017) Bahram Barati et al.   JOURNAL OF APPLIED PHYCOLOGY

Copper-induced early responses involve the activation of Transient Receptor Potential (TRP) channels, release of amino acids, serotonin and adrenalin, and activation of homologs of glutamate, adrenalin and serotonin receptors in the marine alga Ulva compressa

(2017) M. Gómez et al.   Algal Research-Biomass Biofuels and Bioproducts

Copper-induced overexpression of genes encoding antioxidant system enzymes and metallothioneins involve the activation of CaMs, CDPKs and MEK1/2 in the marine alga Ulva compressa

(2016) Daniel Laporte et al.   AQUATIC TOXICOLOGY

Copper-Induced Membrane Depolarizations Involve the Induction of Mosaic TRP Channels, Which Activate VDCC Leading to Calcium Increases in Ulva compressa

(2016) Melissa Gómez et al.   Frontiers in Plant Science

Transcriptomic and metabolomic analysis of copper stress acclimation in Ectocarpus siliculosus highlights signaling and tolerance mechanisms in brown algae

(2014) Andrés Ritter et al.   BMC PLANT BIOLOGY

De novo sequencing and analysis of the Ulva linza transcriptome to discover putative mechanisms associated with its successful colonization of coastal ecosystems

(2012) Xiaowen Zhang et al.   BMC GENOMICS

Cross Talk among Calcium, Hydrogen Peroxide, and Nitric Oxide and Activation of Gene Expression Involving Calmodulins and Calcium-Dependent Protein Kinases in Ulva compressa Exposed to Copper Excess

(2012) A. Gonzalez et al.   PLANT PHYSIOLOGY

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

Physiological responses of Porphyra haitanesis to different copper and zinc concentrations

(2011) Ying Xia Li et al.   BRAZILIAN JOURNAL OF OCEANOGRAPHY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Co-occurring increases of calcium and organellar reactive oxygen species determine differential activation of antioxidant and defense enzymes in Ulva compressa (Chlorophyta) exposed to copper excess

(2010) ALBERTO GONZALEZ et al.   PLANT CELL AND ENVIRONMENT

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Chromium- and copper-induced inhibition of photosynthesis in Euglena gracilis analysed on the single-cell level by fluorescence kinetic microscopy

(2009) Iara Rocchetta et al.   NEW PHYTOLOGIST