Transcriptomic and metabolomic analysis of copper stress acclimation in Ectocarpus siliculosus highlights signaling and tolerance mechanisms in brown algae

TGA transcription factors and jasmonate-independent COI1 signalling regulate specific plant responses to reactive oxylipins

(2013) Henrik U. Stotz et al.   JOURNAL OF EXPERIMENTAL BOTANY

AtABCA9 transporter supplies fatty acids for lipid synthesis to the endoplasmic reticulum

(2012) S. Kim et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A common response to common danger? Comparison of animal and plant signaling pathways involved in cadmium sensing

(2012) Jagna Chmielowska-Bąk et al.   Journal of Cell Communication and Signaling

CAMERA: An Integrated Strategy for Compound Spectra Extraction and Annotation of Liquid Chromatography/Mass Spectrometry Data Sets

(2011) Carsten Kuhl et al.   ANALYTICAL CHEMISTRY

Chlorophyll-binding proteins revisited - a multigenic family of light-harvesting and stress proteins from a brown algal perspective

(2011) Simon M Dittami et al.   BMC EVOLUTIONARY BIOLOGY

Microarray estimation of genomic inter-strain variability in the genus Ectocarpus (Phaeophyceae)

(2011) Simon M Dittami et al.   BMC MOLECULAR BIOLOGY

Brown algae

(2011) J. Mark Cock et al.   CURRENT BIOLOGY

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

The cellular language of myo-inositol signaling

(2011) Glenda E. Gillaspy   NEW PHYTOLOGIST

Toward Systems Biology in Brown Algae to Explore Acclimation and Adaptation to the Shore Environment

(2011) Thierry Tonon et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Integrative analysis of metabolite and transcript abundance during the short-term response to saline and oxidative stress in the brown alga Ectocarpus siliculosus

(2011) SIMON M. DITTAMI et al.   PLANT CELL AND ENVIRONMENT

An Al-inducible MATE gene is involved in external detoxification of Al in rice

(2011) Kengo Yokosho et al.   PLANT JOURNAL

The Response of Diatom Central Carbon Metabolism to Nitrogen Starvation Is Different from That of Green Algae and Higher Plants

(2011) N. L. Hockin et al.   PLANT PHYSIOLOGY

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

Adaptation to high light irradiances enhances the photosynthetic Cu2+ resistance in Cu2+ tolerant and non-tolerant populations of the brown macroalgae Fucus serratus

(2010) Hanne Dalsgaard Nielsen et al.   MARINE POLLUTION BULLETIN

The Ectocarpus genome and the independent evolution of multicellularity in brown algae

(2010) J. Mark Cock et al.   NATURE

Myo-inositol abolishes salicylic acid-dependent cell death and pathogen defence responses triggered by peroxisomal hydrogen peroxide

(2010) Sejir Chaouch et al.   NEW PHYTOLOGIST

Diurnal oscillations of metabolite abundances and gene analysis provide new insights into central metabolic processes of the brown alga Ectocarpus siliculosus

(2010) Antoine Gravot et al.   NEW PHYTOLOGIST

Transcription factor families inferred from genome sequences of photosynthetic stramenopiles

(2010) Edda Rayko et al.   NEW PHYTOLOGIST

The Arabidopsis thaliana Myo-Inositol 1-Phosphate Synthase1 Gene Is Required for Myo-inositol Synthesis and Suppression of Cell Death

(2010) J. L. Donahue et al.   PLANT CELL

Changes in Transcript Abundance in Chlamydomonas reinhardtii following Nitrogen Deprivation Predict Diversion of Metabolism

(2010) R. Miller et al.   PLANT PHYSIOLOGY

Copper stress proteomics highlights local adaptation of two strains of the model brown alga Ectocarpus siliculosus

(2010) Andrés Ritter et al.   PROTEOMICS

Photorespiratory Metabolism: Genes, Mutants, Energetics, and Redox Signaling

(2009) Christine H. Foyer et al.   Annual Review of Plant Biology

Proteomic analysis and identification of copper stress-regulated proteins in the marine alga Scytosiphon gracilis (Phaeophyceae)

(2009) Loretto Contreras et al.   AQUATIC TOXICOLOGY

Protein structure prediction on the Web: a case study using the Phyre server

(2009) Lawrence A Kelley et al.   Nature Protocols

Free Fatty Acids and Methyl Jasmonate Trigger Defense Reactions in Laminaria digitata

(2009) Frithjof C. Küpper et al.   PLANT AND CELL PHYSIOLOGY

Crosstalks between Myo-Inositol Metabolism, Programmed Cell Death and Basal Immunity in Arabidopsis

(2009) Ping Hong Meng et al.   PLoS One

Global expression analysis of the brown alga Ectocarpus siliculosus (Phaeophyceae) reveals large-scale reprogramming of the transcriptome in response to abiotic stress

(2009) Simon M Dittami et al.   GENOME BIOLOGY

Normalisation genes for expression analyses in the brown alga model Ectocarpus siliculosus

(2008) Aude Le Bail et al.   BMC MOLECULAR BIOLOGY

Copper stress induces biosynthesis of octadecanoid and eicosanoid oxygenated derivatives in the brown algal kelpLaminaria digitata

(2008) Andrés Ritter et al.   NEW PHYTOLOGIST

General Detoxification and Stress Responses Are Mediated by Oxidized Lipids through TGA Transcription Factors in Arabidopsis

(2008) S. Mueller et al.   PLANT CELL

Jasmonate Signaling: Toward an Integrated View

(2008) K. Kazan et al.   PLANT PHYSIOLOGY

Plant ABC proteins – a unified nomenclature and updated inventory

(2008) Paul J. Verrier et al.   TRENDS IN PLANT SCIENCE