The 1000IBD project: multi-omics data of 1000 inflammatory bowel disease patients; data release 1

Genomic and Expression Analyses Identify a Disease-Modifying Variant for Fibrostenotic Crohn’s Disease

(2018) Marijn C Visschedijk et al.   Journal of Crohns & Colitis

MOLGENIS Research: Advanced bioinformatics data software for non-bioinformaticians

(2018) K Joeri van der Velde et al.   BIOINFORMATICS

Development and validation of a web-based questionnaire to identify environmental risk factors for inflammatory bowel disease: the Groningen IBD Environmental Questionnaire (GIEQ)

(2018) Kimberley Wilhelmina Johanna van der Sloot et al.   JOURNAL OF GASTROENTEROLOGY

Telemedicine for management of inflammatory bowel disease (myIBDcoach): a pragmatic, multicentre, randomised controlled trial

(2017) Marin J de Jong et al.   LANCET

Fine-mapping inflammatory bowel disease loci to single-variant resolution

(2017) Hailiang Huang et al.   NATURE

Cohort profile: design and first results of the Dutch IBD Biobank: a prospective, nationwide biobank of patients with inflammatory bowel disease

(2017) Lieke M Spekhorst et al.   BMJ Open

BBMRI-ERIC Directory: 515 Biobanks with Over 60 Million Biological Samples

(2016) Petr Holub et al.   BIOPRESERVATION AND BIOBANKING

Interplay of host genetics and gut microbiota underlying the onset and clinical presentation of inflammatory bowel disease

(2016) Floris Imhann et al.   GUT

Inherited determinants of Crohn's disease and ulcerative colitis phenotypes: a genetic association study

(2016) Isabelle Cleynen et al.   LANCET

BBMRI-ERIC Directory: 515 Biobanks with Over 60 Million Biological Samples

(2016) Petr Holub et al.   Biopreservation and Biobanking

Pooled Resequencing of 122 Ulcerative Colitis Genes in a Large Dutch Cohort Suggests Population-Specific Associations of Rare Variants in MUC2

(2016) Marijn C. Visschedijk et al.   PLoS One

Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations

(2015) Jimmy Z Liu et al.   NATURE GENETICS

Epidemiology and risk factors for IBD

(2015) Ashwin N. Ananthakrishnan   Nature Reviews Gastroenterology & Hepatology

Second-generation PLINK: rising to the challenge of larger and richer datasets

(2015) Christopher C Chang et al.   GigaScience

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

The Integrative Human Microbiome Project: Dynamic Analysis of Microbiome-Host Omics Profiles during Periods of Human Health and Disease

(2014)   Cell Host & Microbe

The Treatment-Naive Microbiome in New-Onset Crohn’s Disease

(2014) Dirk Gevers et al.   Cell Host & Microbe

Pediatric Crohn disease patients exhibit specific ileal transcriptome and microbiome signature

(2014) Yael Haberman et al.   JOURNAL OF CLINICAL INVESTIGATION

Performance of the Montreal classification for inflammatory bowel diseases

(2014) Lieke M Spekhorst   WORLD JOURNAL OF GASTROENTEROLOGY

Complex host genetics influence the microbiome in inflammatory bowel disease

(2014) Dan Knights et al.   Genome Medicine

Relative validity of the food frequency questionnaire used to assess dietary intake in the Leiden Longevity Study

(2013) Martinette T Streppel et al.   Nutrition Journal

optiCall: a robust genotype-calling algorithm for rare, low-frequency and common variants

(2012) T. S. Shah et al.   BIOINFORMATICS

Host–microbe interactions have shaped the genetic architecture of inflammatory bowel disease

(2012) Luke Jostins et al.   NATURE

Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment

(2012) Xochitl C Morgan et al.   GENOME BIOLOGY

The MOLGENIS toolkit: rapid prototyping of biosoftware at the push of a button

(2011) Morris A Swertz et al.   BMC BIOINFORMATICS

Self-reported energy intake by FFQ compared with actual energy intake to maintain body weight in 516 adults

(2011) Els Siebelink et al.   BRITISH JOURNAL OF NUTRITION

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Genetic Analysis in A Dutch Study Sample Identifies More Ulcerative Colitis Susceptibility Loci and Shows Their Additive Role in Disease Risk

(2009) Eleonora AM Festen et al.   AMERICAN JOURNAL OF GASTROENTEROLOGY

Inflammatory Bowel Disease

(2009) Clara Abraham et al.   NEW ENGLAND JOURNAL OF MEDICINE