Comparative evolutionary histories of fungal proteases reveal gene gains in the mycoparasitic and nematode-parasitic fungus Clonostachys rosea

Evaluation of Clonostachys rosea for Control of Plant-Parasitic Nematodes in Soil and in Roots of Carrot and Wheat

(2018) Mudassir Iqbal et al.   PHYTOPATHOLOGY

A Three-Way Transcriptomic Interaction Study of a Biocontrol Agent (Clonostachys rosea), a Fungal Pathogen (Helminthosporium solani), and a Potato Host (Solanum tuberosum)

(2017) Erik Lysøe et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

20 years of the SMART protein domain annotation resource

(2017) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Investigating the compatibility of the biocontrol agent Clonostachys rosea IK726 with prodigiosin-producing Serratia rubidaea S55 and phenazine-producing Pseudomonas chlororaphis ToZa7

(2016) Nathalie N. Kamou et al.   ARCHIVES OF MICROBIOLOGY

Phylogenetic analyses reveal molecular signatures associated with functional divergence among Subtilisin like Serine Proteases are linked to lifestyle transitions in Hypocreales

(2016) Deepti Varshney et al.   BMC EVOLUTIONARY BIOLOGY

CDD/SPARCLE: functional classification of proteins via subfamily domain architectures

(2016) Aron Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

Whole genome annotation and comparative genomic analyses of bio-control fungus Purpureocillium lilacinum

(2015) Pushplata Prasad et al.   BMC GENOMICS

Insights on the Evolution of Mycoparasitism from the Genome of Clonostachys rosea

(2015) Magnus Karlsson et al.   Genome Biology and Evolution

Genome Sequence, Comparative Analysis, and Evolutionary Insights into Chitinases of Entomopathogenic Fungus Hirsutella thompsonii

(2015) Yamini Agrawal et al.   Genome Biology and Evolution

The I-TASSER Suite: protein structure and function prediction

(2015) Jianyi Yang et al.   NATURE METHODS

I-TASSER server: new development for protein structure and function predictions

(2015) Jianyi Yang et al.   NUCLEIC ACIDS RESEARCH

Twenty years of theMEROPSdatabase of proteolytic enzymes, their substrates and inhibitors

(2015) Neil D. Rawlings et al.   NUCLEIC ACIDS RESEARCH

Identification of mycoparasitism-related genes in Clonostachys rosea 67-1 active against Sclerotinia sclerotiorum

(2015) Zhan-Bin Sun et al.   Scientific Reports

Drechslerella stenobrocha genome illustrates the mechanism of constricting rings and the origin of nematode predation in fungi

(2014) Keke Liu et al.   BMC GENOMICS

Identification of mycoparasitism-related genes against the phytopathogen Sclerotinia sclerotiorum through transcriptome and expression profile analysis in Trichoderma harzianum

(2014) Andrei Steindorff et al.   BMC GENOMICS

Sequencing and functional analysis of the genome of a nematode egg-parasitic fungus, Pochonia chlamydosporia

(2014) Eduardo Larriba et al.   FUNGAL GENETICS AND BIOLOGY

Comparative Genomics Provide Insights into Evolution of Trichoderma Nutrition Style

(2014) Bin-Bin Xie et al.   Genome Biology and Evolution

Comparative Genomics and Transcriptomics Analyses Reveal Divergent Lifestyle Features of Nematode Endoparasitic Fungus Hirsutella minnesotensis

(2014) Yiling Lai et al.   Genome Biology and Evolution

Functional analysis of a subtilisin-like serine protease gene from biocontrol fungus Trichoderma harzianum

(2014) Haijuan Fan et al.   JOURNAL OF MICROBIOLOGY

Trajectory and genomic determinants of fungal-pathogen speciation and host adaptation

(2014) Xiao Hu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification of differentially expressed genes from Trichoderma harzianum during growth on cell wall of Fusarium solani as a tool for biotechnological application

(2013) Pabline Marinho Vieira et al.   BMC GENOMICS

Comparative transcriptomics reveals different strategies of Trichoderma mycoparasitism

(2013) Lea Atanasova et al.   BMC GENOMICS

Genome survey uncovers the secrets of sex and lifestyle in caterpillar fungus

(2013) Xiao Hu et al.   CHINESE SCIENCE BULLETIN

Estimating Gene Gain and Loss Rates in the Presence of Error in Genome Assembly and Annotation Using CAFE 3

(2013) Mira V. Han et al.   MOLECULAR BIOLOGY AND EVOLUTION

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genomic Mechanisms Accounting for the Adaptation to Parasitism in Nematode-Trapping Fungi

(2013) Tejashwari Meerupati et al.   PLoS Genetics

The Genome of Tolypocladium inflatum: Evolution, Organization, and Expression of the Cyclosporin Biosynthetic Gene Cluster

(2013) Kathryn E. Bushley et al.   PLoS Genetics

Novel traits ofTrichodermapredicted through the analysis of its secretome

(2012) Irina S. Druzhinina et al.   FEMS MICROBIOLOGY LETTERS

Genomic perspectives on the evolution of fungal entomopathogenicity in Beauveria bassiana

(2012) Guohua Xiao et al.   Scientific Reports

Identification of Mycoparasitism-Related Genes in Trichoderma atroviride

(2011) Barbara Reithner et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Independent Subtilases Expansions in Fungi Associated with Animals

(2011) A. Muszewska et al.   MOLECULAR BIOLOGY AND EVOLUTION

Trichoderma: the genomics of opportunistic success

(2011) Irina S. Druzhinina et al.   NATURE REVIEWS MICROBIOLOGY

Genome Sequencing and Comparative Transcriptomics of the Model Entomopathogenic Fungi Metarhizium anisopliae and M. acridum

(2011) Qiang Gao et al.   PLoS Genetics

Genomic and Proteomic Analyses of the Fungus Arthrobotrys oligospora Provide Insights into Nematode-Trap Formation

(2011) Jinkui Yang et al.   PLoS Pathogens

Genome sequence of the insect pathogenic fungus Cordyceps militaris, a valued traditional chinese medicine

(2011) Peng Zheng et al.   GENOME BIOLOGY

Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma

(2011) Christian P Kubicek et al.   GENOME BIOLOGY

Cloning and homology modeling of a serine protease gene (PrC) from the nematophagous fungus Clonostachys rosea

(2010) Lianming Liang et al.   ANNALS OF MICROBIOLOGY

Overexpression of a cuticle-degrading protease Ver112 increases the nematicidal activity of Paecilomyces lilacinus

(2010) Jinkui Yang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

New insights into the evolution of subtilisin-like serine protease genes in Pezizomycotina

(2010) Juan Li et al.   BMC EVOLUTIONARY BIOLOGY

Regulation of subtilisin-like protease prC expression by nematode cuticle in the nematophagous fungus Clonostachys rosea

(2010) Cheng-Gang Zou et al.   ENVIRONMENTAL MICROBIOLOGY

PacC in the nematophagous fungus Clonostachys rosea controls virulence to nematodes

(2010) Cheng-Gang Zou et al.   ENVIRONMENTAL MICROBIOLOGY

Expression of a Serine Protease Gene prC Is Up-Regulated by Oxidative Stress in the Fungus Clonostachys rosea: Implications for Fungal Survival

(2010) Cheng-Gang Zou et al.   PLoS One

Evolution of a subtilisin-like protease gene family in the grass endophytic fungus Epichloë festucae

(2009) Michelle K Bryant et al.   BMC EVOLUTIONARY BIOLOGY

Transcriptomic response of the mycoparasitic fungus Trichoderma atroviride to the presence of a fungal prey

(2009) Verena Seidl et al.   BMC GENOMICS

The crystal structures of two cuticle-degrading proteases from nematophagous fungi and their contribution to infection against nematodes

(2009) Lianming Liang et al.   FASEB JOURNAL

Characterization and gene cloning of a novel serine protease with nematicidal activity fromTrichoderma pseudokoningii SMF2

(2009) Lei-Lei Chen et al.   FEMS MICROBIOLOGY LETTERS

Expressing a fusion protein with protease and chitinase activities increases the virulence of the insect pathogen Beauveria bassiana

(2009) Weiguo Fang et al.   JOURNAL OF INVERTEBRATE PATHOLOGY

Purification, characterization, and gene cloning of an alkaline serine protease from a highly virulent strain of the nematode-endoparasitic fungus Hirsutella rhossiliensis

(2009) Bin Wang et al.   MICROBIOLOGICAL RESEARCH

The Genome of Nectria haematococca: Contribution of Supernumerary Chromosomes to Gene Expansion

(2009) Jeffrey J. Coleman et al.   PLoS Genetics

Real-time RT-PCR expression analysis of chitinase and endoglucanase genes in the three-way interaction between the biocontrol strainClonostachys roseaIK726,Botrytis cinereaand strawberry

(2008) Mojtaba Mamarabadi et al.   FEMS MICROBIOLOGY LETTERS

The oldest fossil evidence of animal parasitism by fungi supports a Cretaceous diversification of fungal–arthropod symbioses

(2008) Gi-Ho Sung et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina)

(2008) Diego Martinez et al.   NATURE BIOTECHNOLOGY

Growth on nitrate and occurrence of nitrate reductase-encoding genes in a phylogenetically diverse range of ectomycorrhizal fungi

(2008) Cajsa M. R. Nygren et al.   NEW PHYTOLOGIST

Unconventional serine proteases: Variations on the catalytic Ser/His/Asp triad configuration

(2008) Özlem Doğan Ekici et al.   PROTEIN SCIENCE