A fully automated pipeline for quantitative genotype calling from next generation sequencing data in autopolyploids

Application of genotyping by sequencing technology to a variety of crop breeding programs

(2016) Changsoo Kim et al.   PLANT SCIENCE

Software for Genome-Wide Association Studies in Autopolyploids and Its Application to Potato

(2016) Umesh R. Rosyara et al.   Plant Genome

AGHmatrix: R Package to Construct Relationship Matrices for Autotetraploid and Diploid Species: A Blueberry Example

(2016) Rodrigo R. Amadeu et al.   Plant Genome

Genome-Wide Association Study Identifies Loci for Salt Tolerance during Germination in Autotetraploid Alfalfa (Medicago sativa L.) Using Genotyping-by-Sequencing

(2016) Long-Xi Yu et al.   Frontiers in Plant Science

Genome-Assisted Prediction of Quantitative Traits Using the R Package sommer

(2016) Giovanny Covarrubias-Pazaran   PLoS One

Identification of Loci Associated with Drought Resistance Traits in Heterozygous Autotetraploid Alfalfa (Medicago sativa L.) Using Genome-Wide Association Studies with Genotyping by Sequencing

(2015) Tiejun Zhang et al.   PLoS One

Novel Methods to Optimize Genotypic Imputation for Low-Coverage, Next-Generation Sequence Data in Crop Plants

(2015) Kelly Swarts et al.   Plant Genome

An improved genome release (version Mt4.0) for the model legume Medicago truncatula

(2014) Haibao Tang et al.   BMC GENOMICS

TASSEL-GBS: A High Capacity Genotyping by Sequencing Analysis Pipeline

(2014) Jeffrey C. Glaubitz et al.   PLoS One

QTL mapping in autotetraploids using SNP dosage information

(2014) Christine A. Hackett et al.   THEORETICAL AND APPLIED GENETICS

A Saturated Genetic Linkage Map of Autotetraploid Alfalfa ( Medicago sativa L.) Developed Using Genotyping-by-Sequencing Is Highly Syntenous with the Medicago truncatula Genome

(2014) Xuehui Li et al.   G3-Genes Genomes Genetics

Genotyping-by-sequencing (GBS), an ultimate marker-assisted selection (MAS) tool to accelerate plant breeding

(2014) Jiangfeng He et al.   Frontiers in Plant Science

Molecular polymorphism and linkage analysis in sweet passion fruit, an outcrossing species

(2013) G.S. Pereira et al.   ANNALS OF APPLIED BIOLOGY

Genotyping-by-sequencing in ecological and conservation genomics

(2013) Shawn R. Narum et al.   MOLECULAR ECOLOGY

A Next-Generation Sequencing Method for Genotyping-by-Sequencing of Highly Heterozygous Autotetraploid Potato

(2013) Jan G. A. M. L. Uitdewilligen et al.   PLoS One

SNP genotyping allows an in-depth characterisation of the genome of sugarcane and other complex autopolyploids

(2013) Antonio A. F. Garcia et al.   Scientific Reports

Switchgrass Genomic Diversity, Ploidy, and Evolution: Novel Insights from a Network-Based SNP Discovery Protocol

(2013) Fei Lu et al.   PLoS Genetics

Efficient Exact Maximum a Posteriori Computation for Bayesian SNP Genotyping in Polyploids

(2012) Oliver Serang et al.   PLoS One

Genotyping-by-Sequencing for Plant Breeding and Genetics

(2012) Jesse A. Poland et al.   Plant Genome

Genotype calling in tetraploid species from bi-allelic marker data using mixture models

(2011) Roeland E Voorrips et al.   BMC BIOINFORMATICS

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS