LimeSeg: a coarse-grained lipid membrane simulation for 3D image segmentation

FlyLimbTracker: An active contour based approach for leg segment tracking in unmarked, freely behaving Drosophila

(2017) Virginie Uhlmann et al.   PLoS One

Real-Time Three-Dimensional Cell Segmentation in Large-Scale Microscopy Data of Developing Embryos

(2016) Johannes Stegmaier et al.   DEVELOPMENTAL CELL

Automatic optimal filament segmentation with sub-pixel accuracy using generalized linear models and B-spline level-sets

(2016) Xun Xiao et al.   MEDICAL IMAGE ANALYSIS

Snakes on a Plane: A perfect snap for bioimage analysis

(2015) Ricard Delgado-Gonzalo et al.   IEEE SIGNAL PROCESSING MAGAZINE

Protein-Mediated Transformation of Lipid Vesicles into Tubular Networks

(2013) Mijo Simunovic et al.   BIOPHYSICAL JOURNAL

ImgLib2—generic image processing in Java

(2012) Tobias Pietzsch et al.   BIOINFORMATICS

Cell Segmentation: 50 Years Down the Road [Life Sciences]

(2012) Erik Meijering   IEEE SIGNAL PROCESSING MAGAZINE

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

NIH Image to ImageJ: 25 years of image analysis

(2012) Caroline A Schneider et al.   NATURE METHODS

TrakEM2 Software for Neural Circuit Reconstruction

(2012) Albert Cardona et al.   PLoS One

3-D Active Meshes: Fast Discrete Deformable Models for Cell Tracking in 3-D Time-Lapse Microscopy

(2011) A Dufour et al.   IEEE TRANSACTIONS ON IMAGE PROCESSING

Estimation of the bending rigidity and spontaneous curvature of fluid membranes in simulations

(2011) Hayato Shiba et al.   PHYSICAL REVIEW E

Localizing Region-Based Active Contours

(2008) S. Lankton et al.   IEEE TRANSACTIONS ON IMAGE PROCESSING