Serine integrase recombinational engineering (SIRE): A versatile toolbox for genome editing

Large scale validation of an efficient CRISPR/Cas-based multi gene editing protocol in Escherichia coli

(2017) Francesca Zerbini et al.   Microbial Cell Factories

Control of serine integrase recombination directionality by fusion with the directionality factor

(2017) Femi J. Olorunniji et al.   NUCLEIC ACIDS RESEARCH

Comparison and optimization of ten phage encoded serine integrases for genome engineering in Saccharomyces cerevisiae

(2016) Zhengyao Xu et al.   BMC BIOTECHNOLOGY

A novel approach for Escherichia coli genome editing combining in vivo cloning and targeted long-length chromosomal insertion

(2016) Ch.D. Hook et al.   JOURNAL OF MICROBIOLOGICAL METHODS

CRISPR/Cas9 nuclease cleavage enables marker-free genome editing in Escherichia coli : A sequential study

(2016) I-Son Ng et al.   Journal of the Taiwan Institute of Chemical Engineers

Development of a fast and easy method for Escherichia coli genome editing with CRISPR/Cas9

(2016) Dongdong Zhao et al.   Microbial Cell Factories

Rapid generation of CRISPR/dCas9-regulated, orthogonally repressible hybrid T7-lac promoters for modular, tuneable control of metabolic pathway fluxes inEscherichia coli

(2016) Brady F. Cress et al.   NUCLEIC ACIDS RESEARCH

Rapid and Efficient One-Step Metabolic Pathway Integration in E. coli

(2016) Marcelo C. Bassalo et al.   ACS Synthetic Biology

A CRISPR-Cas9 Assisted Non-Homologous End-Joining Strategy for One-step Engineering of Bacterial Genome

(2016) Tianyuan Su et al.   Scientific Reports

CiVi: circular genome visualization with unique features to analyze sequence elements: Fig. 1.

(2015) Lex Overmars et al.   BIOINFORMATICS

Metabolic engineering of Escherichia coli using CRISPR–Cas9 meditated genome editing

(2015) Yifan Li et al.   METABOLIC ENGINEERING

grofit: Fitting Biological Growth Curves withR

(2015) Matthias Kahm et al.   Journal of Statistical Software

Permanent genetic memory with >1-byte capacity

(2014) Lei Yang et al.   NATURE METHODS

Chromosome position effects on gene expression in Escherichia coli K-12

(2014) Jack A. Bryant et al.   NUCLEIC ACIDS RESEARCH

Knock-in/Knock-out (KIKO) vectors for rapid integration of large DNA sequences, including whole metabolic pathways, onto the Escherichia coli chromosome at well-characterised loci

(2013) Suriana Sabri et al.   Microbial Cell Factories

DNA thermodynamic stability and supercoil dynamics determine the gene expression program during the bacterial growth cycle

(2013) Patrick Sobetzko et al.   Molecular BioSystems

Rapid metabolic pathway assembly and modification using serine integrase site-specific recombination

(2013) Sean D. Colloms et al.   NUCLEIC ACIDS RESEARCH

Improved Production of l-Threonine in Escherichia coli by Use of a DNA Scaffold System

(2012) Jun Hyoung Lee et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A Profile of Native Integration Sites Used by φC31 Integrase in the Bovine Genome

(2012) Lijuan Qu et al.   Journal of Genetics and Genomics

A Modular Cloning System for Standardized Assembly of Multigene Constructs

(2011) Ernst Weber et al.   PLoS One

Serine recombinases as tools for genome engineering

(2010) William R.A. Brown et al.   METHODS

Biosynthesis of chiral 3-hydroxyvalerate from single propionate-unrelated carbon sources in metabolically engineered E. coli

(2010) Hsien-Chung Tseng et al.   Microbial Cell Factories

Site-specific chromosomal integration of large synthetic constructs

(2010) Thomas E. Kuhlman et al.   NUCLEIC ACIDS RESEARCH

Design, construction and characterization of a set of insulated bacterial promoters

(2010) J. H. Davis et al.   NUCLEIC ACIDS RESEARCH

Circular Polymerase Extension Cloning of Complex Gene Libraries and Pathways

(2009) Jiayuan Quan et al.   PLoS One