Reconstruction of a Global Transcriptional Regulatory Network for Control of Lipid Metabolism in Yeast by Using Chromatin Immunoprecipitation with Lambda Exonuclease Digestion
出版年份 2018 全文链接
标题
Reconstruction of a Global Transcriptional Regulatory Network for Control of Lipid Metabolism in Yeast by Using Chromatin Immunoprecipitation with Lambda Exonuclease Digestion
作者
关键词
-
出版物
mSystems
Volume 3, Issue 4, Pages -
出版商
American Society for Microbiology
发表日期
2018-07-30
DOI
10.1128/msystems.00215-17
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Global transcriptional regulatory network forEscherichia colirobustly connects gene expression to transcription factor activities
- (2017) Xin Fang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Engineering of synthetic, stress-responsive yeast promoters
- (2016) Arun S. Rajkumar et al. NUCLEIC ACIDS RESEARCH
- Genome-Wide Mapping of Binding Sites Reveals Multiple Biological Functions of the Transcription Factor Cst6p in Saccharomyces cerevisiae
- (2016) Guodong Liu et al. mBio
- Production of fatty acid-derived oleochemicals and biofuels by synthetic yeast cell factories
- (2016) Yongjin J. Zhou et al. Nature Communications
- Controllability analysis of transcriptional regulatory networks reveals circular control patterns among transcription factors
- (2015) Tobias Österlund et al. Integrative Biology
- Microbial acetyl-CoA metabolism and metabolic engineering
- (2015) Anastasia Krivoruchko et al. METABOLIC ENGINEERING
- Predicting the sequence specificities of DNA- and RNA-binding proteins by deep learning
- (2015) Babak Alipanahi et al. NATURE BIOTECHNOLOGY
- Deep learning for regulatory genomics
- (2015) Yongjin Park et al. NATURE BIOTECHNOLOGY
- Spurious transcription factor binding: Non-functional or genetically redundant?
- (2014) Mikhail Spivakov BIOESSAYS
- Inactivation of Yeast Isw2 Chromatin Remodeling Enzyme Mimics Longevity Effect of Calorie Restriction via Induction of Genotoxic Stress Response
- (2014) Weiwei Dang et al. Cell Metabolism
- Deciphering Fur transcriptional regulatory network highlights its complex role beyond iron metabolism in Escherichia coli
- (2014) Sang Woo Seo et al. Nature Communications
- Integrated analysis, transcriptome-lipidome, reveals the effects of INO-level (INO2 and INO4) on lipid metabolism in yeast
- (2013) Pramote Chumnanpuen et al. BMC Systems Biology
- Mapping Yeast Transcriptional Networks
- (2013) T. R. Hughes et al. GENETICS
- Genomic Reconstruction of the Transcriptional Regulatory Network in Bacillus subtilis
- (2013) S. A. Leyn et al. JOURNAL OF BACTERIOLOGY
- Enriching the gene set analysis of genome-wide data by incorporating directionality of gene expression and combining statistical hypotheses and methods
- (2013) Leif Väremo et al. NUCLEIC ACIDS RESEARCH
- Nucleosome Free Regions in Yeast Promoters Result from Competitive Binding of Transcription Factors That Interact with Chromatin Modifiers
- (2013) Evgeniy A. Ozonov et al. PLoS Computational Biology
- Fast and accurate preparation fatty acid methyl esters by microwave-assisted derivatization in the yeast Saccharomyces cerevisiae
- (2012) Sakda Khoomrung et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration
- (2012) H. Thorvaldsdottir et al. BRIEFINGS IN BIOINFORMATICS
- Metabolism and Regulation of Glycerolipids in the Yeast Saccharomyces cerevisiae
- (2012) Susan A. Henry et al. GENETICS
- Integrated analysis of transcriptome and lipid profiling reveals the co-influences of inositol–choline and Snf1 in controlling lipid biosynthesis in yeast
- (2012) Pramote Chumnanpuen et al. MOLECULAR GENETICS AND GENOMICS
- High Resolution Genome Wide Binding Event Finding and Motif Discovery Reveals Transcription Factor Spatial Binding Constraints
- (2012) Yuchun Guo et al. PLoS Computational Biology
- Comprehensive Genome-wide Protein-DNA Interactions Detected at Single-Nucleotide Resolution
- (2011) Ho Sung Rhee et al. CELL
- YeTFaSCo: a database of evaluated yeast transcription factor sequence specificities
- (2011) C. G. de Boer et al. NUCLEIC ACIDS RESEARCH
- Curated collection of yeast transcription factor DNA binding specificity data reveals novel structural and gene regulatory insights
- (2011) Raluca Gordân et al. GENOME BIOLOGY
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- Backup in gene regulatory networks explains differences between binding and knockout results
- (2009) Anthony Gitter et al. Molecular Systems Biology
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- Yeast transcription factor Oaf1 forms homodimer and induces some oleate-responsive genes in absence of Pip2
- (2008) Joanna Trzcinska-Danielewicz et al. BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
- Comparative analysis of the complex transcription-factor gene regulatory networks of E. coli and S. cerevisiae
- (2008) Lev Guzman-Vargas et al. BMC Systems Biology
- Binding Characteristics and Regulatory Mechanisms of the Transcription Factors Controlling Oleate-responsive Genes inSaccharomyces cerevisiae
- (2008) Igor V. Karpichev et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Reconstruction of biochemical networks in microorganisms
- (2008) Adam M. Feist et al. NATURE REVIEWS MICROBIOLOGY
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started