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Application of synthetic biology for production of chemicals in yeastSaccharomyces cerevisiae

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Mapping Yeast Transcriptional Networks

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The RAVEN Toolbox and Its Use for Generating a Genome-scale Metabolic Model for Penicillium chrysogenum

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An integrated encyclopedia of DNA elements in the human genome

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Cscan: finding common regulators of a set of genes by using a collection of genome-wide ChIP-seq datasets

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Fifteen years of large scale metabolic modeling of yeast: Developments and impacts

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Interactome Networks and Human Disease

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Controllability of complex networks

(2011) Yang-Yu Liu et al.   NATURE

ChEA: transcription factor regulation inferred from integrating genome-wide ChIP-X experiments

(2010) Alexander Lachmann et al.   BIOINFORMATICS

A protocol for generating a high-quality genome-scale metabolic reconstruction

(2010) Ines Thiele et al.   Nature Protocols

RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units)

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Probabilistic integrative modeling of genome-scale metabolic and regulatory networks inEscherichia coliandMycobacterium tuberculosis

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Combinatorial effects of environmental parameters on transcriptional regulation in Saccharomyces cerevisiae: A quantitative analysis of a compendium of chemostat-based transcriptome data

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Transcription factor control of growth rate dependent genes in Saccharomyces cerevisiae: A three factor design

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Revisiting the role of yeast Sfp1 in ribosome biogenesis and cell size control: a chemostat study

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