Bacterial microbiota protect an invasive bark beetle from a pine defensive compound

Microbial interactions within the plant holobiont

(2018) M. Amine Hassani et al.   Microbiome

Microbiome and ecotypic adaption of Holcus lanatus (L.) to extremes of its soil pH range, investigated through transcriptome sequencing

(2018) Ellen Young et al.   Microbiome

The Role of Symbiotic Microbes in Insect Invasions

(2016) Min Lu et al.   Annual Review of Ecology Evolution and Systematics

Degradation of phenanthrene by Novosphingobium sp. HS2a improved plant growth in PAHs-contaminated environments

(2016) Sara Rodriguez-Conde et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Does cryptic microbiota mitigate pine resistance to an invasive beetle-fungus complex? Implications for invasion potential

(2016) Chihang Cheng et al.   Scientific Reports

Mutualistic Interactions and Biological Invasions

(2014) Anna Traveset et al.   Annual Review of Ecology Evolution and Systematics

Functional genomics and microbiome profiling of the Asian longhorned beetle (Anoplophora glabripennis) reveal insights into the digestive physiology and nutritional ecology of wood feeding beetles

(2014) Erin D Scully et al.   BMC GENOMICS

The ambrosia symbiosis is specific in some species and promiscuous in others: evidence from community pyrosequencing

(2014) Martin Kostovcik et al.   ISME Journal

Yeast Diversity Associated with Invasive Dendroctonus valens Killing Pinus tabuliformis in China Using Culturing and Molecular Methods

(2014) Qiao-Zhe Lou et al.   MICROBIAL ECOLOGY

An integrated catalog of reference genes in the human gut microbiome

(2014) Junhua Li et al.   NATURE BIOTECHNOLOGY

Biodegradation of Polycyclic Aromatic Hydrocarbons by Novosphingobium pentaromativorans US6-1

(2014) Yihua Lyu et al.   PLoS One

The rhizosphere microbiota of plant invaders: an overview of recent advances in the microbiomics of invasive plants

(2014) Vanessa C. Coats et al.   Frontiers in Microbiology

Habitat degradation impacts black howler monkey (Alouatta pigra) gastrointestinal microbiomes

(2013) Katherine R Amato et al.   ISME Journal

Strong coupling of plant and fungal community structure across western Amazonian rainforests

(2013) Kabir G Peay et al.   ISME Journal

Amplicon pyrosequencing reveals the soil microbial diversity associated with invasive Japanese barberry (Berberis thunbergiiDC.)

(2013) V. C. Coats et al.   MOLECULAR ECOLOGY

Towards a unified paradigm for sequence-based identification of fungi

(2013) Urmas Kõljalg et al.   MOLECULAR ECOLOGY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Invasive Harlequin Ladybird Carries Biological Weapons Against Native Competitors

(2013) A. Vilcinskas et al.   SCIENCE

Microbiome diversity ofAphis glycineswith extensive superinfection in native and invasive populations

(2013) Raman Bansal et al.   Environmental Microbiology Reports

Red Turpentine Beetle: Innocuous Native Becomes Invasive Tree Killer in China

(2012) Jianghua Sun et al.   Annual Review of Entomology

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Assessment of Metagenomic Assembly Using Simulated Next Generation Sequencing Data

(2012) Daniel R. Mende et al.   PLoS One

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

(2012) Ruibang Luo et al.   GigaScience

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Do novel genotypes drive the success of an invasive bark beetle–fungus complex? Implications for potential reinvasion

(2011) Min Lu et al.   ECOLOGY

Fungal endophytes directly increase the competitive effects of an invasive forb

(2011) Erik T. Aschehoug et al.   ECOLOGY

Composition and dynamics of the gill microbiota of an invasive Indo-Pacific oyster in the eastern Mediterranean Sea

(2011) Dror Zurel et al.   ENVIRONMENTAL MICROBIOLOGY

Integrative analysis of environmental sequences using MEGAN4

(2011) D. H. Huson et al.   GENOME RESEARCH

Alien plants associate with widespread generalist arbuscular mycorrhizal fungal taxa: evidence from a continental-scale study using massively parallel 454 sequencing

(2011) Mari Moora et al.   JOURNAL OF BIOGEOGRAPHY

Bacterial Diversity in Solenopsis invicta and Solenopsis geminata Ant Colonies Characterized by 16S amplicon 454 Pyrosequencing

(2011) Heather D. Ishak et al.   MICROBIAL ECOLOGY

The sudden emergence of pathogenicity in insect-fungus symbioses threatens naive forest ecosystems

(2011) J. Hulcr et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Rapid Spread of a Bacterial Symbiont in an Invasive Whitefly Is Driven by Fitness Benefits and Female Bias

(2011) A. G. Himler et al.   SCIENCE

Terrestrial Ecosystem Responses to Species Gains and Losses

(2011) D. A. Wardle et al.   SCIENCE

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Experimental factors affecting PCR-based estimates of microbial species richness and evenness

(2010) Anna Engelbrektson et al.   ISME Journal

A human gut microbial gene catalogue established by metagenomic sequencing

(2010) Junjie Qin et al.   NATURE

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Complex interactions among host pines and fungi vectored by an invasive bark beetle

(2010) Min Lu et al.   NEW PHYTOLOGIST

Co-invasion by Pinus and its mycorrhizal fungi

(2010) Ian A. Dickie et al.   NEW PHYTOLOGIST

Ab initio gene identification in metagenomic sequences

(2010) Wenhan Zhu et al.   NUCLEIC ACIDS RESEARCH

Mycorrhizal Symbioses and Plant Invasions

(2009) Anne Pringle et al.   Annual Review of Ecology Evolution and Systematics

Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates

(2009) Victor Kunin et al.   ENVIRONMENTAL MICROBIOLOGY

Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data

(2009) Micah Hamady et al.   ISME Journal

Hidden diversity of endophytic fungi in an invasive plant

(2008) A. Shipunov et al.   AMERICAN JOURNAL OF BOTANY

An invasive plantfungal mutualism reduces arthropod diversity

(2008) Jennifer A. Rudgers et al.   ECOLOGY LETTERS