Article
Microbiology
Yutaro Kumagai, Takashi Hirasawa, Masaaki Wachi
Summary: The study investigated the intracellular localization of wild-type and mutant LtsA proteins fused with GFP, revealing that the C-terminal domain is required for peripheral localization. Furthermore, differential staining of cell wall structures showed that the ltsA mutant cells had impaired formation of the mycolic acid-containing layer at the cell division planes, leading to increased susceptibility to lysozyme.
Article
Biotechnology & Applied Microbiology
Cheng Li, Charles A. Swofford, Christian Ruckert, Anthony J. Sinskey
Summary: Optimizing the recombineering efficiency in Corynebacterium glutamicum by testing different recombinase/exonuclease pairs resulted in the highest efficiency reported in the literature, with 13,250 transformed colonies/10^9 viable cells achieved for dsDNA integration. This optimized system allows for the deletion of over 40,000 bp in one transformation step and will greatly improve the speed of genetic modifications in C. glutamicum.
BIOTECHNOLOGY AND BIOENGINEERING
(2021)
Article
Biotechnology & Applied Microbiology
Taehee Han, Sang Yup Lee
Summary: The biosynthesis of Valerolactam (VL) was achieved by metabolically engineered Corynebacterium glutamicum, which overproduces L-lysine. This provides a green and sustainable method for the production of precursor chemicals for nylon-5 and nylon 6,5.
METABOLIC ENGINEERING
(2023)
Article
Biochemistry & Molecular Biology
Jinhui Niu, Zhitao Mao, Yufeng Mao, Ke Wu, Zhenkun Shi, Qianqian Yuan, Jingyi Cai, Hongwu Ma
Summary: The genome-scale enzyme-constrained model (ecCGL1) improves the prediction of phenotypes and simulates overflow metabolism in Corynebacterium glutamicum, while also recapitulating the trade-off between biomass yield and enzyme usage efficiency.
Article
Biotechnology & Applied Microbiology
Hideo Kawaguchi, Tomohisa Hasunuma, Yasuo Ohnishi, Takashi Sazuka, Akihiko Kondo, Chiaki Ogino
Summary: The study demonstrated the importance of oxygen concentration on amino acid production, showing that reducing dissolved oxygen levels can increase the specific productivity of 3,4-AHBA. Metabolome analysis revealed significant metabolic pathway changes under oxygen limitation, while an Idh deletion mutant exhibited higher 3,4-AHBA production in glucose fed-batch culture.
MICROBIAL CELL FACTORIES
(2021)
Article
Biotechnology & Applied Microbiology
Xixi Zhao, Yanling Wu, Tingye Feng, Junfeng Shen, Huan Lu, Yunfeng Zhang, Howard H. Chou, Xiaozhou Luo, Jay D. Keasling
Summary: In this study, a biosynthetic pathway for valerolactam production was established by engineering Corynebacterium glutamicum. L-lysine was converted into 5-aminovaleric acid, and then further converted into valerolactam through a dynamic upregulation system. The engineered system achieved efficient valerolactam production in glucose fed-batch culture.
METABOLIC ENGINEERING
(2023)
Article
Biotechnology & Applied Microbiology
Suvasini Balasubramanian, Jun Chen, Vinoth Wigneswaran, Claus Heiner Bang-Berthelsen, Peter Ruhdal Jensen
Summary: This study focuses on improving protein production and secretion in Corynebacterium glutamicum using droplet-based microfluidic high throughput screening. Through chemical mutagenesis and DBM screening, a library of C. glutamicum secreting beta-glucosidase was generated with several mutants showing enhanced enzyme secretion capacity. Whole-genome analysis revealed specific mutations in genes associated with protein synthesis and secretion, leading to higher secretion levels of beta-glucosidase and alpha-amylase in the supernatant of the mutants. These results demonstrate the potential of DBM screening as a powerful tool for optimizing cell factories for heterologous protein production.
FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY
(2021)
Article
Biotechnology & Applied Microbiology
Takahisa Kogure, Masako Suda, Kazumi Hiraga, Masayuki Inui
Summary: Protocatechuic acid (PCA) is a natural bioactive phenolic acid that can be produced by Corynebacterium glutamicum through the DHS and 4-HBA pathways. Simultaneous utilization of both pathways is an efficient method for PCA production, with the highest reported productivity reaching 82.7 g/L.
METABOLIC ENGINEERING
(2021)
Review
Biotechnology & Applied Microbiology
Hongzhen Luo, Zheng Liu, Fang Xie, Muhammad Bilal, Lina Liu, Rongling Yang, Zhaoyu Wang
Summary: The article discusses the applications, metabolic pathways, and physiological functions of GABA in different microorganisms, as well as the current process engineering strategies and strain development strategies for enhanced GABA production. It also examines the challenges and research directions for economic microbial production of GABA.
CRITICAL REVIEWS IN BIOTECHNOLOGY
(2021)
Article
Agriculture, Multidisciplinary
Jaewoo Son, In Hyeok Choi, Chang Gyu Lim, Jun Hong Jang, Hyun Bae Bang, Ji Won Cha, Eun Jung Jeon, Min Gi Sohn, Hyo Jin Yun, Sun Chang Kim, Ki Jun Jeong
Summary: In this study, Corynebacterium glutamicum was engineered as a whole-cell biocatalyst for the efficient bioconversion of trans-cinnamic acid into cinnamaldehyde. The conversion yield of 1.1 g/L cinnamaldehyde from 1.2 g/L trans-cinnamic acid was achieved within 30 minutes, with 100% conversion efficiency.
JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY
(2022)
Review
Biotechnology & Applied Microbiology
Shengzhu Yu, Bo Zheng, Zhenya Chen, Yi-Xin Huo
Summary: Branched chain amino acids have been synthesized through metabolic engineering in Corynebacterium glutamicum. Further research should focus on the feedback inhibition and transcription attenuation mechanisms of key enzymes, as well as the development of enzymes with substrate specificity for the production of individual BCAAs. The strategies used in constructing BCAAs-producing strains provide valuable guidance for the biosynthesis of other high value-added compounds.
MICROBIAL CELL FACTORIES
(2021)
Article
Biotechnology & Applied Microbiology
Jin-Yu Wang, Zhi-Ming Rao, Jian-Zhong Xu, Wei-Guo Zhang
Summary: This study presents the development of a recombinant Corynebacterium glutamicum strain for efficient beta-alanine production through genetic modifications and enzyme selection. By optimizing carbon flux and enzyme expression, the engineered strain achieved significant improvements in beta-alanine yield, providing insights for constructing other valuable biochemicals.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
(2021)
Article
Agricultural Engineering
Zemin Li, Qiuting Wang, Hui Liu, Yating Wang, Zhaoyi Zheng, Yang Zhang, Tianwei Tan
Summary: In this study, the GlcNAc synthesis pathway was constructed in Corynebacterium glutamicum, resulting in increased yield and titer of GlcNAc. Optimal fermentation conditions and feeding strategy further enhanced the production, showing potential for industrial production of GlcNAc.
BIORESOURCE TECHNOLOGY
(2023)
Article
Agricultural Engineering
Qi Sheng, Xiaoyu Wu, Yan Jiang, Zhimin Li, Fei Wang, Bin Zhang
Summary: This study demonstrated the biobased production of L-ornithine from mannitol using engineered Corynebacterium glutamicum, providing a reference for the production of additional chemicals from mannitol.
BIORESOURCE TECHNOLOGY
(2021)
Article
Microbiology
Lynn S. Schwardmann, Aron K. Dransfeld, Thomas Schaeffer, Volker F. Wendisch
Summary: DPA is a heat-stable and easily biodegradable compound that has the potential to replace fossil-based plastics and has pharmaceutical applications. This study successfully achieved de novo production of DPA in C. glutamicum by overexpressing related genes and explored the utilization of different carbon sources and non-sterile conditions for DPA production.
Article
Biotechnology & Applied Microbiology
Takahiro Yukawa, Takahiro Bamba, Mami Matsuda, Takanobu Yoshida, Kentaro Inokuma, Jungyeon Kim, Jae Won Lee, Yong-Su Jin, Akihiko Kondo, Tomohisa Hasunuma
Summary: Efficient production of 3,4-dihydroxybutyrate from xylose by engineered yeast was achieved through genetic and environmental perturbations. The biosynthetic pathway of 3,4-dihydroxybutyrate was established by deleting ADH6 and overexpressing yneI genes in yeast. Alkaline fermentation was performed to minimize xylonate accumulation and led to the highest combined product yields compared with previous studies.
BIOTECHNOLOGY AND BIOENGINEERING
(2023)
Article
Biotechnology & Applied Microbiology
Kentaro Inokuma, Shunya Miyamoto, Kohei Morinaga, Yuma Kobayashi, Ryota Kumokita, Takahiro Bamba, Yoichiro Ito, Akihiko Kondo, Tomohisa Hasunuma
Summary: In this study, a bioprocess was developed to produce 4-hydroxybenzoic acid (4-HBA) directly from cellulose using recombinant Pichia pastoris that displays heterologous cellulolytic enzymes on its cell surface. The cellulolytic enzymes, including beta-glucosidase, endoglucanase, and cellobiohydrolase, were co-displayed on the cell surface of P. pastoris. A highly 4-HBA-resistant chorismate pyruvate-lyase was also expressed in the cellulase-displaying strain. This strain achieved a 4-HBA yield of 975 mg/L from phosphoric acid swollen cellulose (PASC), which is over two times higher than the yield from glucose.
BIOTECHNOLOGY AND BIOENGINEERING
(2023)
Article
Chemistry, Multidisciplinary
Shangjie Zhang, Feng Guo, Qiao Yang, Yujia Jiang, Shihui Yang, Jiangfeng Ma, Fengxue Xin, Tomohisa Hasunuma, Akihiko Kondo, Wenming Zhang, Min Jiang
Summary: In this study, the oleaginous yeast Yarrowia lipolytica was rationally engineered to utilize methanol and produce value-added chemicals like succinic acid. Through metabolic pathway engineering and gene regulation, the recombinant strain showed enhanced methanol utilization and cell growth. Transcriptome analysis revealed the rebalancing of methylotrophic metabolism. The study demonstrates the successful biological conversion of methanol into valuable chemicals.
Article
Biochemical Research Methods
Musashi Takekana, Takanobu Yoshida, Erika Yoshida, Sumika Ono, Shinnosuke Horie, Christopher J. Vavricka, Moe Hiratani, Kenji Tsuge, Jun Ishii, Yoshihiro Hayakawa, Akihiko Kondo, Tomohisa Hasunuma
Summary: Conventional analysis of microbial bioproducers using liquid cultures is time consuming and limits productivity. This study introduces a new method, SFE-SFC-MS/MS, which allows for direct evaluation of microbial bioproduction colonies. Compared to traditional analysis, this method offers faster and more convenient screening of highly productive strains.
JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES
(2023)
Article
Plant Sciences
Kenya Tanaka, Tomokazu Shirai, Christopher J. Vavricka, Mami Matsuda, Akihiko Kondo, Tomohisa Hasunuma
Summary: Quantitative metabolome dynamics reveal that high accumulation of glycolytic intermediates in darkness enable efficient metabolism switching for the smooth initiation of photosynthesis in cyanobacteria. Dark-to-light transitions in cyanobacteria involve drastic metabolic changes from dark respiratory metabolism to CO2 fixation through the Calvin-Benson-Bassham cycle. This study demonstrates rapid dynamic changes in metabolite concentrations and C-13 tracer incorporation after light irradiation in Synechocystis sp. PCC 6803, allowing estimation of nonstationary metabolic flux underlying CBB cycle activation. Accumulation of glycolytic intermediates is essential for efficient metabolism switching under fluctuating light environments, as indicated by the decrease in the initial oxygen evolution rate in mutants deficient in glycogen degradation or oxidative pentose phosphate pathways.
Article
Energy & Fuels
Daniel A. Alfaro-Sayes, Jerome Amoah, Nova Rachmadona, Shinji Hama, Tomohisa Hasunuma, Akihiko Kondo, Chiaki Ogino
Summary: The aim of this study was to evaluate the effect of alginate immobilization on the growth and lipid productivity of the microalgae Chlorella sorokiniana. The results showed that immobilization technology can enhance the growth and lipid productivity of microalgae.
JOURNAL OF PHYSICS-ENERGY
(2023)
Article
Microbiology
Yuji Haraguchi, Yuichi Kato, Kosuke Inabe, Akihiko Kondo, Tomohisa Hasunuma, Tatsuya Shimizu
Summary: Recently, a circular cell culture (CCC) system using microalgae and animal muscle cells was developed for sustainable food production. However, lactate accumulation from animal cells in the system posed a significant challenge. To address this issue, an advanced CCC system utilizing a lactate-assimilating cyanobacterium was employed. The cyanobacteria and animal cells exchanged substances via their waste media, leading to efficient amplification of animal muscle cells without the need for animal serum.
ARCHIVES OF MICROBIOLOGY
(2023)
Correction
Gastroenterology & Hepatology
Yunlong Sui, Namiko Hoshi, Ryuichi Ohgaki, Lingling Kong, Ryutaro Yoshida, Norihiro Okamoto, Masato Kinoshita, Haruka Miyazaki, Yuna Ku, Eri Tokunaga, Yuki Ito, Daisuke Watanabe, Makoto Ooi, Masakazu Shinohara, Kengo Sasaki, Yoh Zen, Takenori Kotani, Takashi Matozaki, Zibin Tian, Yoshikatsu Kanai, Yuzo Kodama
JOURNAL OF GASTROENTEROLOGY
(2023)
Article
Multidisciplinary Sciences
Yuichi Kato, Kosuke Inabe, Yuji Haraguchi, Tatsuya Shimizu, Akihiko Kondo, Tomohisa Hasunuma
Summary: To develop a sustainable animal cell culture system, researchers introduced the lldD gene from Escherichia coli into Synechococcus sp. PCC 7002, enabling the strain to consume l-lactate. This consumption was accelerated by the expression of the lldP gene and an increase in culture temperature. The study provides new insight into the treatment of l-lactate by photosynthetic microorganisms, potentially enhancing the feasibility of animal cell culture industries.
SCIENTIFIC REPORTS
(2023)
Article
Biotechnology & Applied Microbiology
Erina Yoshida, Yuichi Kato, Akihiko Kanamoto, Akihiko Kondo, Tomohisa Hasunuma
Summary: This study analyzed the effect of nitrogen sources on the production of fucoxanthin by OPMS 30543X microalgae. It was found that using NaNO3 as the nitrogen source resulted in higher fucoxanthin content compared to using NH4Cl. This suggests that nitrogen sources can influence the metabolic processes and biosynthesis of fucoxanthin by OPMS 30543X. The findings of this study can guide the commercial production of fucoxanthin using microalgae.
ALGAL RESEARCH-BIOMASS BIOFUELS AND BIOPRODUCTS
(2023)
Article
Immunology
Atomu Yamaguchi, Noriaki Maeshige, Jiawei Yan, Xiaoqi Ma, Mikiko Uemura, Mami Matsuda, Yuya Nishimura, Tomohisa Hasunuma, Hiroyo Kondo, Hidemi Fujino, Zhi-Min Yuan
Summary: This study found that myotube-derived extracellular vesicles (EVs) can suppress macrophage inflammatory responses while activating the IRG1-itaconate pathway. The miRNA composition of EVs may be related to their anti-inflammatory effects.
FRONTIERS IN IMMUNOLOGY
(2023)
Article
Plant Sciences
Abigail Loren Tung Uy, Atsushi Yamamoto, Mami Matsuda, Toshihiro Arae, Tomohisa Hasunuma, Taku Demura, Misato Ohtani
Summary: Carbon flow shifts from glycolysis to the shikimate pathway during xylem vessel cell differentiation, accompanied by active changes in the levels of cellulose and lignin precursors.
PLANT AND CELL PHYSIOLOGY
(2023)
Article
Multidisciplinary Sciences
Mikiko Uemura, Noriaki Maeshige, Atomu Yamaguchi, Xiaoqi Ma, Mami Matsuda, Yuya Nishimura, Tomohisa Hasunuma, Taketo Inoue, Jiawei Yan, Ji Wang, Hiroyo Kondo, Hidemi Fujino
Summary: This study investigated the effect of electrical stimulation (ES) on the metabolism and inflammatory responses of macrophages. The results showed that ES had an anti-inflammatory effect by reducing inflammation and oxidative stress in macrophages, while increasing antioxidant metabolites. This suggests that ES can improve the function of macrophages.
SCIENTIFIC REPORTS
(2023)
Review
Biotechnology & Applied Microbiology
Shuai Zhao, Ting Zhang, Tomohisa Hasunuma, Akihiko Kondo, Xin-Qing Zhao, Jia-Xun Feng
Summary: This review compares the cellulase and xylanase biosynthesis in two filamentous fungi, P. oxalicum and T. reesei, and highlights the strikingly different modes of genome-wide regulation of these enzymes. The understanding of these differences may lead to improvements in fungal enzyme production through metabolic engineering and synthetic biology.
CRITICAL REVIEWS IN BIOTECHNOLOGY
(2023)
Meeting Abstract
Biotechnology & Applied Microbiology
Koichi Kitagawa, A. Ruhan, Kentaro Inokuma, Yuka Yoshigoe, Tomohisa Hasunuma, Toshiro Shirakawa