Variation in the leaf and root microbiome of sugar maple (Acer saccharum) at an elevational range limit

Assembly and ecological function of the root microbiome across angiosperm plant species

(2018) Connor R. Fitzpatrick et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Drought and host selection influence bacterial community dynamics in the grass root microbiome

(2017) Dan Naylor et al.   ISME Journal

Root microbiota drive direct integration of phosphate stress and immunity

(2017) Gabriel Castrillo et al.   NATURE

Leaf bacterial diversity mediates plant diversity and ecosystem function relationships

(2017) Isabelle Laforest-Lapointe et al.   NATURE

Drought Stress Results in a Compartment-Specific Restructuring of the Rice Root-Associated Microbiomes

(2017) Christian Santos-Medellín et al.   mBio

Assessing tree germination resilience to global warming: a manipulative experiment using sugar maple (Acer saccharum)

(2016) Kevin A. Solarik et al.   SEED SCIENCE RESEARCH

Host genotype and age shape the leaf and root microbiomes of a wild perennial plant

(2016) Maggie R. Wagner et al.   Nature Communications

Host species identity, site and time drive temperate tree phyllosphere bacterial community structure

(2016) Isabelle Laforest-Lapointe et al.   Microbiome

Functional overlap of the Arabidopsis leaf and root microbiota

(2015) Yang Bai et al.   NATURE

Structure, variation, and assembly of the root-associated microbiomes of rice

(2015) Joseph Edwards et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Salicylic acid modulates colonization of the root microbiome by specific bacterial taxa

(2015) S. L. Lebeis et al.   SCIENCE

Plant traits and taxonomy drive host associations in tropical phyllosphere fungal communities

(2014) Steven W. Kembel et al.   Botany

Biodiversity acts as insurance of productivity of bacterial communities under abiotic perturbations

(2014) Ashutosh Awasthi et al.   ISME Journal

Bacterial Community Assemblages Associated with the Phyllosphere, Dermosphere, and Rhizosphere of Tree Species of the Atlantic Forest are Host Taxon Dependent

(2014) Marcio R. Lambais et al.   MICROBIAL ECOLOGY

Influence of Artifact Removal on Rare Species Recovery in Natural Complex Communities Using High-Throughput Sequencing

(2014) Aibin Zhan et al.   PLoS One

Relationships between phyllosphere bacterial communities and plant functional traits in a neotropical forest

(2014) S. W. Kembel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Non-climatic constraints on upper elevational plant range expansion under climate change

(2014) C. D. Brown et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Microbes in the neonatal intensive care unit resemble those found in the gut of premature infants

(2014) Brandon Brooks et al.   Microbiome

Structure and Functions of the Bacterial Microbiota of Plants

(2013) Davide Bulgarelli et al.   Annual Review of Plant Biology

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

PEAR: a fast and accurate Illumina Paired-End reAd mergeR

(2013) J. Zhang et al.   BIOINFORMATICS

Geographical variation in reproductive capacity of sugar maple (Acer saccharumMarshall) northern peripheral populations

(2013) Noémie Graignic et al.   JOURNAL OF BIOGEOGRAPHY

Fungal community analysis by high-throughput sequencing of amplified markers - a user's guide

(2013) Björn D. Lindahl et al.   NEW PHYTOLOGIST

Bacterial Communities Associated with the Leaves and the Roots of Arabidopsis thaliana

(2013) Natacha Bodenhausen et al.   PLoS One

A Multifactor Analysis of Fungal and Bacterial Community Structure in the Root Microbiome of Mature Populus deltoides Trees

(2013) Migun Shakya et al.   PLoS One

Comparison of ITS1 and ITS2 rDNA in 454 sequencing of hyperdiverse fungal communities

(2012) Anna L. Bazzicalupo et al.   Fungal Ecology

Defining the core Arabidopsis thaliana root microbiome

(2012) Derek S. Lundberg et al.   NATURE

Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota

(2012) Davide Bulgarelli et al.   NATURE

Microbial life in the phyllosphere

(2012) Julia A. Vorholt   NATURE REVIEWS MICROBIOLOGY

Seasonal trends in the biomass and structure of bryophyte-associated fungal communities explored by 454 pyrosequencing

(2012) Marie L. Davey et al.   NEW PHYTOLOGIST

The composition of phyllosphere fungal assemblages of European beech (Fagus sylvatica ) varies significantly along an elevation gradient

(2012) Tristan Cordier et al.   NEW PHYTOLOGIST

Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi

(2012) C. L. Schoch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The rhizosphere microbiome and plant health

(2012) Roeland L. Berendsen et al.   TRENDS IN PLANT SCIENCE

Protection of Arabidopsis thaliana against Leaf-Pathogenic Pseudomonas syringae by Sphingomonas Strains in a Controlled Model System

(2011) Gerd Innerebner et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Modulation of Host Immunity by Beneficial Microbes

(2011) Christos Zamioudis et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

ITS-1 versus ITS-2 pyrosequencing: a comparison of fungal populations in truffle grounds

(2011) Antonietta Mello et al.   MYCOLOGIA

Deciphering the Rhizosphere Microbiome for Disease-Suppressive Bacteria

(2011) R. Mendes et al.   SCIENCE

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

Picante: R tools for integrating phylogenies and ecology

(2010) S. W. Kembel et al.   BIOINFORMATICS

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Microbes do not follow the elevational diversity patterns of plants and animals

(2010) Noah Fierer et al.   ECOLOGY

The ecology of the phyllosphere: geographic and phylogenetic variability in the distribution of bacteria on tree leaves

(2010) Amanda J. Redford et al.   ENVIRONMENTAL MICROBIOLOGY

Predicting species distribution and abundance responses to climate change: why it is essential to include biotic interactions across trophic levels

(2010) W. H. Van der Putten et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Microbiome Profiling by Illumina Sequencing of Combinatorial Sequence-Tagged PCR Products

(2010) Gregory B. Gloor et al.   PLoS One

Rhizosphere chemical dialogues: plant–microbe interactions

(2009) Dayakar V Badri et al.   CURRENT OPINION IN BIOTECHNOLOGY

Tree species range shifts at a continental scale: new predictive insights from a process-based model

(2008) Xavier Morin et al.   JOURNAL OF ECOLOGY

Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex

(2008) Micah Hamady et al.   NATURE METHODS

Estimating potential habitat for 134 eastern US tree species under six climate scenarios

(2007) Louis R. Iverson et al.   FOREST ECOLOGY AND MANAGEMENT