Does more sequence data improve estimates of galliform phylogeny? Analyses of a rapid radiation using a complete data matrix

MICROEVOLUTIONARY PROCESSES GENERATE PHYLOGENOMIC DISCORDANCE AT ANCIENT DIVERGENCES

(2013) Jeffrey C. Oliver   EVOLUTION

Identifying localized biases in large datasets: A case study using the avian tree of life

(2013) Rebecca T. Kimball et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Sampling strategies for species trees: The effects on phylogenetic inference of the number of genes, number of individuals, and whether loci are mitochondrial, sex-linked, or autosomal

(2013) Ammon Corl et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

How low can you go? The effects of mutation rate on the accuracy of species-tree estimation

(2013) Hayley C. Lanier et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

STRAW: Species TRee Analysis Web server

(2013) Timothy I. Shaw et al.   NUCLEIC ACIDS RESEARCH

A Large-Scale, Higher-Level, Molecular Phylogenetic Study of the Insect Order Lepidoptera (Moths and Butterflies)

(2013) Jerome C. Regier et al.   PLoS One

Assessing Phylogenetic Relationships among Galliformes: A Multigene Phylogeny with Expanded Taxon Sampling in Phasianidae

(2013) Ning Wang et al.   PLoS One

Strong mitochondrial DNA support for a Cretaceous origin of modern avian lineages

(2012) Joseph W Brown et al.   BMC BIOLOGY

Phylogenetic affinities of evolutionarily enigmatic African galliforms: the Stone PartridgePtilopachus petrosusand Nahan's FrancolinFrancolinus nahani,and support for their sister relationship with New World quails

(2012) Callan Cohen et al.   IBIS

Empirical evaluation of partitioning schemes for phylogenetic analyses of mitogenomic data: An avian case study

(2012) Alexis F.L.A. Powell et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Impact of Deep Coalescence on the Reliability of Species Tree Inference from Different Types of DNA Markers in Mammals

(2012) Alejandro Sánchez-Gracia et al.   PLoS One

Ratite Nonmonophyly: Independent Evidence from 40 Novel Loci

(2012) Jordan V. Smith et al.   SYSTEMATIC BIOLOGY

Homoplastic microinversions and the avian tree of life

(2011) Edward L Braun et al.   BMC EVOLUTIONARY BIOLOGY

The impact of taxon sampling on phylogenetic inference: a review of two decades of controversy

(2011) A. R. Nabhan et al.   BRIEFINGS IN BIOINFORMATICS

Testing Hypotheses about the Sister Group of the Passeriformes Using an Independent 30-Locus Data Set

(2011) N. Wang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Are Transposable Element Insertions Homoplasy Free?: An Examination Using the Avian Tree of Life

(2011) Kin-Lan Han et al.   SYSTEMATIC BIOLOGY

Estimating Species Trees from Unrooted Gene Trees

(2011) Liang Liu et al.   SYSTEMATIC BIOLOGY

BUCKy: Gene tree/species tree reconciliation with Bayesian concordance analysis

(2010) Bret R. Larget et al.   BIOINFORMATICS

A mitogenomic perspective on the ancient, rapid radiation in the Galliformes with an emphasis on the phasianidae

(2010) Yong-Yi Shen et al.   BMC EVOLUTIONARY BIOLOGY

From Reptilian Phylogenomics to Reptilian Genomes: Analyses of c-Jun and DJ-1 Proto-Oncogenes

(2010) Y. Katsu et al.   CYTOGENETIC AND GENOME RESEARCH

Metaves, Mirandornithes, Strisores and other novelties - a critical review of the higher-level phylogeny of neornithine birds

(2010) Gerald Mayr   JOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH

Comparative molecular evolution and phylogenetic utility of 3′-UTRs and introns in Galliformes

(2010) Amber J. Bonilla et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Multi-Platform Next-Generation Sequencing of the Domestic Turkey (Meleagris gallopavo): Genome Assembly and Analysis

(2010) Rami A. Dalloul et al.   PLOS BIOLOGY

Maximum Likelihood Estimates of Species Trees: How Accuracy of Phylogenetic Inference Depends upon the Divergence History and Sampling Design

(2009) John E. McCormack et al.   SYSTEMATIC BIOLOGY

Phylogenetic position of the genus Tetraophasis (Aves, Galliformes, Phasianidae) as inferred from mitochondrial and nuclear sequences

(2008) Yang Meng et al.   BIOCHEMICAL SYSTEMATICS AND ECOLOGY

Introns outperform exons in analyses of basal avian phylogeny using clathrin heavy chain genes

(2008) Jena L. Chojnowski et al.   GENE

Toward Resolving Deep Neoaves Phylogeny: Data, Signal Enhancement, and Priors

(2008) R. C. Pratt et al.   MOLECULAR BIOLOGY AND EVOLUTION

A well-tested set of primers to amplify regions spread across the avian genome

(2008) Rebecca T. Kimball et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Broad phylogenomic sampling improves resolution of the animal tree of life

(2008) Casey W. Dunn et al.   NATURE

Phylogenomic evidence for multiple losses of flight in ratite birds

(2008) J. Harshman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Phylogenomic Study of Birds Reveals Their Evolutionary History

(2008) S. J. Hackett et al.   SCIENCE