Elucidating gene function and function evolution through comparison of co-expression networks of plants

The Cell Biology of Cellulose Synthesis

(2014) Heather E. McFarlane et al.   Annual Review of Plant Biology

A large-scale evaluation of computational protein function prediction

(2013) Predrag Radivojac et al.   NATURE METHODS

Identification of Arabidopsis BAK1-Associating Receptor-Like Kinase 1 (BARK1) and Characterization of its Gene Expression and Brassinosteroid-Regulated Root Phenotypes

(2013) Min Hee Kim et al.   PLANT AND CELL PHYSIOLOGY

Data Integration through Proximity-Based Networks Provides Biological Principles of Organization across Scales

(2013) S. Kleessen et al.   PLANT CELL

Genomic Clues to the Ancestral Flowering Plant

(2013) K. Adams   SCIENCE

Towards revealing the functions of all genes in plants

(2013) Seung Yon Rhee et al.   TRENDS IN PLANT SCIENCE

The origin of the plant body axis

(2012) Minako Ueda et al.   CURRENT OPINION IN PLANT BIOLOGY

Co-expression Analysis Identifies CRC and AP1 the Regulator of Arabidopsis Fatty Acid Biosynthesis

(2012) Xinxin Han et al.   Journal of Integrative Plant Biology

Three Arabidopsis DUF579 Domain-Containing GXM Proteins are Methyltransferases Catalyzing 4-O-Methylation of Glucuronic Acid on Xylan

(2012) C. Lee et al.   PLANT AND CELL PHYSIOLOGY

CHITINASE-LIKE1/POM-POM1 and Its Homolog CTL2 Are Glucan-Interacting Proteins Important for Cellulose Biosynthesis in Arabidopsis

(2012) C. Sanchez-Rodriguez et al.   PLANT CELL

POM-POM2/CELLULOSE SYNTHASE INTERACTING1 Is Essential for the Functional Association of Cellulose Synthase and Microtubules in Arabidopsis

(2012) M. Bringmann et al.   PLANT CELL

Comparative co-expression analysis in plant biology

(2012) SARA MOVAHEDI et al.   PLANT CELL AND ENVIRONMENT

BAR expressolog identification: expression profile similarity ranking of homologous genes in plant species

(2012) Rohan V. Patel et al.   PLANT JOURNAL

Moss cell walls: structure and biosynthesis

(2012) Alison W. Roberts et al.   Frontiers in Plant Science

The CELLULOSE SYNTHASE-LIKE A and CELLULOSE SYNTHASE-LIKE C families: recent advances and future perspectives

(2012) Aaron H. Liepman et al.   Frontiers in Plant Science

Plant Glycosyltransferases Beyond CAZy: A Perspective on DUF Families

(2012) Sara Fasmer Hansen et al.   Frontiers in Plant Science

PlaNet: Combined Sequence and Expression Comparisons across Plant Networks Derived from Seven Species

(2011) M. Mutwil et al.   PLANT CELL

Dissecting Plant Genomes with the PLAZA Comparative Genomics Platform

(2011) M. Van Bel et al.   PLANT PHYSIOLOGY

Comparative Network Analysis Reveals That Tissue Specificity and Gene Function Are Important Factors Influencing the Mode of Expression Evolution in Arabidopsis and Rice

(2011) S. Movahedi et al.   PLANT PHYSIOLOGY

SLocX: predicting subcellular localization of Arabidopsis proteins leveraging gene expression data

(2011) Malgorzata Ryngajllo   Frontiers in Plant Science

Large-Scale Co-Expression Approach to Dissect Secondary Cell Wall Formation Across Plant Species

(2011) Colin Ruprecht et al.   Frontiers in Plant Science

Hemicelluloses

(2010) Henrik Vibe Scheller et al.   Annual Review of Plant Biology

CoP: a database for characterizing co-expressed gene modules with biological information in plants

(2010) Y. Ogata et al.   BIOINFORMATICS

Network-based function prediction and interactomics: The case for metabolic enzymes

(2010) S.C. Janga et al.   METABOLIC ENGINEERING

Rational association of genes with traits using a genome-scale gene network for Arabidopsis thaliana

(2010) Insuk Lee et al.   NATURE BIOTECHNOLOGY

Prephenate aminotransferase directs plant phenylalanine biosynthesis via arogenate

(2010) Hiroshi Maeda et al.   Nature Chemical Biology

Fasciclin-like arabinogalactan proteins: specialization for stem biomechanics and cell wall architecture in Arabidopsis and Eucalyptus

(2010) Colleen P. MacMillan et al.   PLANT JOURNAL

Arabidopsis - a powerful model system for plant cell wall research

(2010) Aaron H. Liepman et al.   PLANT JOURNAL

Genome-Wide Computational Function Prediction of Arabidopsis Proteins by Integration of Multiple Data Sources

(2010) Y. A. I. Kourmpetis et al.   PLANT PHYSIOLOGY

Identification of a cellulose synthase-associated protein required for cellulose biosynthesis

(2010) Y. Gu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

FERONIA receptor-like kinase regulates RHO GTPase signaling of root hair development

(2010) Qiaohong Duan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

STARNET 2: a web-based tool for accelerating discovery of gene regulatory networks using microarray co-expression data

(2009) Daniel Jupiter et al.   BMC BIOINFORMATICS

The cellulose synthase superfamily in fully sequenced plants and algae

(2009) Yanbin Yin et al.   BMC PLANT BIOLOGY

Transcriptional Wiring of Cell Wall-Related Genes in Arabidopsis

(2009) Marek Mutwil et al.   Molecular Plant

Co-expression tools for plant biology: opportunities for hypothesis generation and caveats

(2009) BJ��RN USADEL et al.   PLANT CELL AND ENVIRONMENT

Selaginella and 400 Million Years of Separation

(2008) Jo Ann Banks   Annual Review of Plant Biology

A new picture of cell wall protein dynamics in elongating cells of Arabidopsis thaliana: Confirmed actors and newcomers

(2008) Muhammad Irshad et al.   BMC PLANT BIOLOGY

Laying down the bricks: logistic aspects of cell wall biosynthesis

(2008) Daniela A Geisler et al.   CURRENT OPINION IN PLANT BIOLOGY

GeneCAT—novel webtools that combine BLAST and co-expression analyses

(2008) Marek Mutwil et al.   NUCLEIC ACIDS RESEARCH

A Battery of Transcription Factors Involved in the Regulation of Secondary Cell Wall Biosynthesis in Arabidopsis

(2008) R. Zhong et al.   PLANT CELL

Cysteine proteases XCP1 and XCP2 aid micro-autolysis within the intact central vacuole during xylogenesis in Arabidopsis roots

(2008) Utku Avci et al.   PLANT JOURNAL

Characterization of IRX10 and IRX10-like reveals an essential role in glucuronoxylan biosynthesis in Arabidopsis

(2008) David M. Brown et al.   PLANT JOURNAL