Multiple Mitochondrial Introgression Events and Heteroplasmy in Trypanosoma cruzi Revealed by Maxicircle MLST and Next Generation Sequencing

Phylogenetic reconstruction based on Cytochrome b (Cytb) gene sequences reveals distinct genotypes within Colombian Trypanosoma cruzi I populations

(2011) Juan David Ramírez et al.   ACTA TROPICA

The Trypanosoma cruzi Sylvio X10 strain maxicircle sequence: the third musketeer

(2011) Laura I Ruvalcaba-Trejo et al.   BMC GENOMICS

Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization

(2011) Todd A Minning et al.   BMC GENOMICS

Extraordinary Trypanosoma cruzi diversity within single mammalian reservoir hosts implies a mechanism of diversifying selection

(2011) Martin S. Llewellyn et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Identification of the meiotic life cycle stage ofTrypanosoma bruceiin the tsetse fly

(2011) Lori Peacock et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Multilocus Sequence Typing (MLST) for Lineage Assignment and High Resolution Diversity Studies in Trypanosoma cruzi

(2011) Matthew Yeo et al.   PLoS Neglected Tropical Diseases

Shotgun Sequencing Analysis of Trypanosoma cruzi I Sylvio X10/1 and Comparison with T. cruzi VI CL Brener

(2011) Oscar Franzén et al.   PLoS Neglected Tropical Diseases

Recent, Independent and Anthropogenic Origins of Trypanosoma cruzi Hybrids

(2011) Michael D. Lewis et al.   PLoS Neglected Tropical Diseases

Interest and limitations of Spliced Leader Intergenic Region sequences for analyzing Trypanosoma cruzi I phylogenetic diversity in the Argentinean Chaco

(2010) Nicolás Tomasini et al.   INFECTION GENETICS AND EVOLUTION

Chagas disease

(2010) Anis Rassi et al.   LANCET

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Chagas Cardiomyopathy Manifestations and Trypanosoma cruzi Genotypes Circulating in Chronic Chagasic Patients

(2010) Juan David Ramírez et al.   PLoS Neglected Tropical Diseases

Sex, Subdivision, and Domestic Dispersal of Trypanosoma cruzi Lineage I in Southern Ecuador

(2010) Sofía Ocaña-Mayorga et al.   PLoS Neglected Tropical Diseases

Genotyping of Trypanosoma cruzi: Systematic Selection of Assays Allowing Rapid and Accurate Discrimination of All Known Lineages

(2009) Michael D. Lewis et al.   AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE

Tablet--next generation sequence assembly visualization

(2009) I. Milne et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Chromosome level assembly of the hybrid Trypanosoma cruzi genome

(2009) D Brent Weatherly et al.   BMC GENOMICS

Trypanosoma cruzi: New insights on ecophylogeny and hybridization by multigene sequencing of three nuclear and one maxicircle genes

(2009) M. Subileau et al.   EXPERIMENTAL PARASITOLOGY

Comparative phylogeography of Trypanosoma cruzi TCIIc: New hosts, association with terrestrial ecotopes, and spatial clustering

(2009) Arlei Marcili et al.   INFECTION GENETICS AND EVOLUTION

Trypanosoma cruzi maxicircle heterogeneity in Chagas disease patients from Brazil

(2009) Julio César Carranza et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

Flow cytometric analysis and microsatellite genotyping reveal extensive DNA content variation in Trypanosoma cruzi populations and expose contrasts between natural and experimental hybrids

(2009) Michael D. Lewis et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

A new consensus for Trypanosoma cruzi intraspecific nomenclature: second revision meeting recommends TcI to TcVI

(2009) B Zingales et al.   MEMORIAS DO INSTITUTO OSWALDO CRUZ

Selective amplification of maxicircle classes during the life cycle of Leishmania major

(2009) Pavel N. Flegontov et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

TriTrypDB: a functional genomic resource for the Trypanosomatidae

(2009) Martin Aslett et al.   NUCLEIC ACIDS RESEARCH

The molecular epidemiology and phylogeography of Trypanosoma cruzi and parallel research on Leishmania: looking back and to the future

(2009) M. A. MILES et al.   PARASITOLOGY

Trypanosoma cruzi IIc: Phylogenetic and Phylogeographic Insights from Sequence and Microsatellite Analysis and Potential Impact on Emergent Chagas Disease

(2009) Martin S. Llewellyn et al.   PLoS Neglected Tropical Diseases

Genome-Scale Multilocus Microsatellite Typing of Trypanosoma cruzi Discrete Typing Unit I Reveals Phylogeographic Structure and Specific Genotypes Linked to Human Infection

(2009) Martin S. Llewellyn et al.   PLoS Pathogens

Haplotype identification within Trypanosoma cruzi I in Colombian isolates from several reservoirs, vectors and humans

(2008) Alejandra Falla et al.   ACTA TROPICA

Differentiation of Trypanosoma cruzi I subgroups through characterization of cytochrome b gene sequences

(2008) Angel E. Spotorno O et al.   INFECTION GENETICS AND EVOLUTION

Trypanosoma cruzi in Brazilian Amazonia: Lineages TCI and TCIIa in wild primates, Rhodnius spp. and in humans with Chagas disease associated with oral transmission

(2008) Arlei Marcili et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

jModelTest: Phylogenetic Model Averaging

(2008) D. Posada   MOLECULAR BIOLOGY AND EVOLUTION

The use of yellow fluorescent hybrids to indicate mating in Trypanosoma brucei

(2008) Wendy Gibson et al.   Parasites & Vectors