Hunchback is counter-repressed to regulate even-skipped stripe 2 expression in Drosophila embryos

Comprehensive Analysis of a cis -Regulatory Region Reveals Pleiotropy in Enhancer Function

(2018) Ella Preger-Ben Noon et al.   Cell Reports

Transcriptional Regulatory Circuits: Predicting Numbers from Alphabets

(2018) Harold D. Kim et al.   SCIENCE

A Simple Grammar Defines Activating and Repressing cis -Regulatory Elements in Photoreceptors

(2016) Michael A. White et al.   Cell Reports

A gene expression atlas of a bicoid-depleted Drosophila embryo reveals early canalization of cell fate

(2015) M. V. Staller et al.   DEVELOPMENT

BCL11A enhancer dissection by Cas9-mediated in situ saturating mutagenesis

(2015) Matthew C. Canver et al.   NATURE

Shadow enhancers enable Hunchback bifunctionality in theDrosophilaembryo

(2015) Max V. Staller et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

JAK/STAT and Hox Dynamic Interactions in an Organogenetic Gene Cascade

(2015) Pedro B. Pinto et al.   PLoS Genetics

Comparing mRNA levels using in situ hybridization of a target gene and co-stain

(2014) Zeba Wunderlich et al.   METHODS

Naturally Occurring Deletions of Hunchback Binding Sites in the Even-Skipped Stripe 3+7 Enhancer

(2014) Arnar Palsson et al.   PLoS One

Quantitative Modeling of a Gene's Expression from Its Intergenic Sequence

(2014) Md. Abul Hassan Samee et al.   PLoS Computational Biology

Rearrangements of 2.5 Kilobases of Noncoding DNA from the Drosophila even-skipped Locus Define Predictive Rules of Genomic cis-Regulatory Logic

(2013) Ah-Ram Kim et al.   PLoS Genetics

Extensive Divergence of Transcription Factor Binding in Drosophila Embryos with Highly Conserved Gene Expression

(2013) Mathilde Paris et al.   PLoS Genetics

Cellular resolution models for even skipped regulation in the entire Drosophila embryo

(2013) Garth R Ilsley et al.   eLife

Depleting Gene Activities in Early Drosophila Embryos with the "Maternal-Gal4-shRNA" System

(2012) M. V. Staller et al.   GENETICS

Gli Proteins in Development and Disease

(2011) Chi-chung Hui et al.   Annual Review of Cell and Developmental Biology

Combinatorial activation and concentration-dependent repression of the Drosophila even skipped stripe 3+7 enhancer

(2011) P. Struffi et al.   DEVELOPMENT

How to make stripes: deciphering the transition from non-periodic to periodic patterns in Drosophila segmentation

(2011) M. D. Schroeder et al.   DEVELOPMENT

The Ikaros gene family: Transcriptional regulators of hematopoiesis and immunity

(2011) Liza B. John et al.   MOLECULAR IMMUNOLOGY

Dynamic reprogramming of chromatin accessibility during Drosophila embryo development

(2011) Sean Thomas et al.   GENOME BIOLOGY

Recombineering Hunchback identifies two conserved domains required to maintain neuroblast competence and specify early-born neuronal identity

(2010) K. D. Tran et al.   DEVELOPMENT

REDfly v3.0: toward a comprehensive database of transcriptional regulatory elements in Drosophila

(2010) S. M. Gallo et al.   NUCLEIC ACIDS RESEARCH

FlyFactorSurvey: a database of Drosophila transcription factor binding specificities determined using the bacterial one-hybrid system

(2010) Lihua Julie Zhu et al.   NUCLEIC ACIDS RESEARCH

Binding Site Turnover Produces Pervasive Quantitative Changes in Transcription Factor Binding between Closely Related Drosophila Species

(2010) Robert K. Bradley et al.   PLOS BIOLOGY

Thermodynamics-Based Models of Transcriptional Regulation by Enhancers: The Roles of Synergistic Activation, Cooperative Binding and Short-Range Repression

(2010) Xin He et al.   PLoS Computational Biology

DNA Binding Site Sequence Directs Glucocorticoid Receptor Structure and Activity

(2009) S. H. Meijsing et al.   SCIENCE

A Quantitative Spatiotemporal Atlas of Gene Expression in the Drosophila Blastoderm

(2008) Charless C. Fowlkes et al.   CELL

A systematic characterization of factors that regulate Drosophila segmentation via a bacterial one-hybrid system

(2008) Marcus B. Noyes et al.   NUCLEIC ACIDS RESEARCH

FlyEx, the quantitative atlas on segmentation gene expression at cellular resolution

(2008) A. Pisarev et al.   NUCLEIC ACIDS RESEARCH

Dual regulation by the Hunchback gradient in the Drosophila embryo

(2008) D. Papatsenko et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

How the Dorsal gradient works: Insights from postgenome technologies

(2008) J.-W. Hong et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sepsid even-skipped Enhancers Are Functionally Conserved in Drosophila Despite Lack of Sequence Conservation

(2008) Emily E. Hare et al.   PLoS Genetics