标题
Extensive Copy-Number Variation of Young Genes across Stickleback Populations
作者
关键词
Sticklebacks, Comparative genomics, Evolutionary genetics, Genome evolution, Genetic loci, Genomic databases, Lakes, Rivers
出版物
PLoS Genetics
Volume 10, Issue 12, Pages e1004830
出版商
Public Library of Science (PLoS)
发表日期
2014-12-05
DOI
10.1371/journal.pgen.1004830
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- A genome-wide survey reveals a deletion polymorphism associated with resistance to gastrointestinal nematodes in Angus cattle
- (2014) Lingyang Xu et al. FUNCTIONAL & INTEGRATIVE GENOMICS
- New Gene Evolution: Little Did We Know
- (2013) Manyuan Long et al. Annual Review of Genetics
- Genomic divergence between nine- and three-spined sticklebacks
- (2013) Baocheng Guo et al. BMC GENOMICS
- Rates and Genomic Consequences of Spontaneous Mutational Events in Drosophila melanogaster
- (2013) Daniel R. Schrider et al. GENETICS
- Phylogeography and adaptation genetics of stickleback from the Haida Gwaii archipelago revealed using genome-wide single nucleotide polymorphism genotyping
- (2013) Bruce E. Deagle et al. MOLECULAR ECOLOGY
- Selectome update: quality control and computational improvements to a database of positive selection
- (2013) Sébastien Moretti et al. NUCLEIC ACIDS RESEARCH
- The role of gene conversion in preserving rearrangement hotspots in the human genome
- (2013) Jeffrey A. Fawcett et al. TRENDS IN GENETICS
- Copy-number changes in evolution: rates, fitness effects and adaptive significance
- (2013) Vaishali Katju et al. Frontiers in Genetics
- New genes expressed in human brains: Implications for annotating evolving genomes
- (2012) Yong E. Zhang et al. BIOESSAYS
- DELLY: structural variant discovery by integrated paired-end and split-read analysis
- (2012) T. Rausch et al. BIOINFORMATICS
- Genome-wide patterns of standing genetic variation in a marine population of three-spined sticklebacks
- (2012) PHILINE G. D. FEULNER et al. MOLECULAR ECOLOGY
- Genome divergence during evolutionary diversification as revealed in replicate lake-stream stickleback population pairs
- (2012) MARIUS ROESTI et al. MOLECULAR ECOLOGY
- The genomic basis of adaptive evolution in threespine sticklebacks
- (2012) Felicity C. Jones et al. NATURE
- Gene duplication as a mechanism of genomic adaptation to a changing environment
- (2012) F. A. Kondrashov PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Copy Number Variation of Multiple Genes at Rhg1 Mediates Nematode Resistance in Soybean
- (2012) D. E. Cook et al. SCIENCE
- Exploring the role of copy number variants in human adaptation
- (2012) Rebecca C. Iskow et al. TRENDS IN GENETICS
- The variant call format and VCFtools
- (2011) P. Danecek et al. BIOINFORMATICS
- iAssembler: a package for de novo assembly of Roche-454/Sanger transcriptome sequences
- (2011) Yi Zheng et al. BMC BIOINFORMATICS
- High Spontaneous Rate of Gene Duplication in Caenorhabditis elegans
- (2011) Kendra J. Lipinski et al. CURRENT BIOLOGY
- Copy number variation analysis in the great apes reveals species-specific patterns of structural variation
- (2011) E. Gazave et al. GENOME RESEARCH
- CNVnator: An approach to discover, genotype, and characterize typical and atypical CNVs from family and population genome sequencing
- (2011) A. Abyzov et al. GENOME RESEARCH
- A framework for variation discovery and genotyping using next-generation DNA sequencing data
- (2011) Mark A DePristo et al. NATURE GENETICS
- The evolutionary origin of orphan genes
- (2011) Diethard Tautz et al. NATURE REVIEWS GENETICS
- Ensembl 2012
- (2011) P. Flicek et al. NUCLEIC ACIDS RESEARCH
- MACSE: Multiple Alignment of Coding SEquences Accounting for Frameshifts and Stop Codons
- (2011) Vincent Ranwez et al. PLoS One
- The Ecoresponsive Genome of Daphnia pulex
- (2011) J. K. Colbourne et al. SCIENCE
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- Parasite diversity, patterns of MHC II variation and olfactory based mate choice in diverging three-spined stickleback ecotypes
- (2010) Christophe Eizaguirre et al. EVOLUTIONARY ECOLOGY
- Gene copy-number polymorphism in nature
- (2010) D. R. Schrider et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Diversity of Human Copy Number Variation and Multicopy Genes
- (2010) Peter H. Sudmant et al. SCIENCE
- Systematic Inference of Copy-Number Genotypes from Personal Genome Sequencing Data Reveals Extensive Olfactory Receptor Gene Content Diversity
- (2010) Sebastian M. Waszak et al. PLoS Computational Biology
- Population Genomics of Parallel Adaptation in Threespine Stickleback using Sequenced RAD Tags
- (2010) Paul A. Hohenlohe et al. PLoS Genetics
- Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads
- (2009) K. Ye et al. BIOINFORMATICS
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Comparative analysis of copy number variation in primate genomes
- (2009) H. Kehrer-Sawatzki et al. CYTOGENETIC AND GENOME RESEARCH
- Minimal Effect of Ectopic Gene Conversion Among Recent Duplicates in Four Mammalian Genomes
- (2009) C. L. McGrath et al. GENETICS
- BreakDancer: an algorithm for high-resolution mapping of genomic structural variation
- (2009) Ken Chen et al. NATURE METHODS
- Positive Darwinian selection and the birth of an olfactory receptor clade in teleosts
- (2009) A. Hussain et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Adaptive Evolution of Pelvic Reduction in Sticklebacks by Recurrent Deletion of a Pitx1 Enhancer
- (2009) Y. F. Chan et al. SCIENCE
- The origins and impact of primate segmental duplications
- (2009) Tomas Marques-Bonet et al. TRENDS IN GENETICS
- More than just orphans: are taxonomically-restricted genes important in evolution?
- (2009) Konstantin Khalturin et al. TRENDS IN GENETICS
- The current excitement about copy-number variation: how it relates to gene duplications and protein families
- (2008) Jan O Korbel et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- Speciation accelerated and stabilized by pleiotropic major histocompatibility complex immunogenes
- (2008) Christophe Eizaguirre et al. ECOLOGY LETTERS
- EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates
- (2008) A. J. Vilella et al. GENOME RESEARCH
- Analysis of copy number variants and segmental duplications in the human genome: Evidence for a change in the process of formation in recent evolutionary history
- (2008) P. M. Kim et al. GENOME RESEARCH
- Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
- (2008) D. R. Zerbino et al. GENOME RESEARCH
- Distribution and functional impact of DNA copy number variation in the rat
- (2008) Victor Guryev et al. NATURE GENETICS
- Analyzing real-time PCR data by the comparative CT method
- (2008) Thomas D Schmittgen et al. Nature Protocols
- Turning a hobby into a job: How duplicated genes find new functions
- (2008) Gavin C. Conant et al. NATURE REVIEWS GENETICS
- Selectome: a database of positive selection
- (2008) E. Proux et al. NUCLEIC ACIDS RESEARCH
- Evolutionary Patterns and Selective Pressures of Odorant/Pheromone Receptor Gene Families in Teleost Fishes
- (2008) Yasuyuki Hashiguchi et al. PLoS One
- A genome-wide view of the spectrum of spontaneous mutations in yeast
- (2008) M. Lynch et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Natural Selection Shapes Genome-Wide Patterns of Copy-Number Polymorphism in Drosophila melanogaster
- (2008) J. J. Emerson et al. SCIENCE
- Assessing the Evolutionary Impact of Amino Acid Mutations in the Human Genome
- (2008) Adam R. Boyko et al. PLoS Genetics
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started