Multi-level Modeling of Light-Induced Stomatal Opening Offers New Insights into Its Regulation by Drought

Modelling the widespread effects of TOC1 signalling on the plant circadian clock and its outputs

(2013) Alexandra Pokhilko et al.   BMC Systems Biology

Dynamical modeling and analysis of large cellular regulatory networks

(2013) D. Bérenguier et al.   CHAOS

Nitrated Cyclic GMP Modulates Guard Cell Signaling in Arabidopsis

(2013) T. Joudoi et al.   PLANT CELL

Boolean Network Model for Cancer Pathways: Predicting Carcinogenesis and Targeted Therapy Outcomes

(2013) Herman F. Fumiã et al.   PLoS One

The Duration of T Cell Stimulation Is a Critical Determinant of Cell Fate and Plasticity

(2013) N. Miskov-Zivanov et al.   Science Signaling

A Reduction Method for Boolean Network Models Proven to Conserve Attractors

(2013) Assieh Saadatpour et al.   SIAM JOURNAL ON APPLIED DYNAMICAL SYSTEMS

Logic-based models in systems biology: a predictive and parameter-free network analysis method

(2012) Michelle L. Wynn et al.   Integrative Biology

Digital clocks: simple Boolean models can quantitatively describe circadian systems

(2012) O. E. Akman et al.   Journal of the Royal Society Interface

Boolean modeling in systems biology: an overview of methodology and applications

(2012) Rui-Sheng Wang et al.   PHYSICAL BIOLOGY

OnGuard, a Computational Platform for Quantitative Kinetic Modeling of Guard Cell Physiology

(2012) A. Hills et al.   PLANT PHYSIOLOGY

Systems Dynamic Modeling of a Guard Cell Cl- Channel Mutant Uncovers an Emergent Homeostatic Network Regulating Stomatal Transpiration

(2012) Y. Wang et al.   PLANT PHYSIOLOGY

Systems Dynamic Modeling of the Stomatal Guard Cell Predicts Emergent Behaviors in Transport, Signaling, and Volume Control

(2012) Z.-H. Chen et al.   PLANT PHYSIOLOGY

Bio-Logic Builder: A Non-Technical Tool for Building Dynamical, Qualitative Models

(2012) Tomáš Helikar et al.   PLoS One

Anion channels: master switches of stress responses

(2012) M. Rob G. Roelfsema et al.   TRENDS IN PLANT SCIENCE

Network Model of Immune Responses Reveals Key Effectors to Single and Co-infection Dynamics by a Respiratory Bacterium and a Gastrointestinal Helminth

(2012) Juilee Thakar et al.   PLoS Computational Biology

ADAM: Analysis of Discrete Models of Biological Systems Using Computer Algebra

(2011) Franziska Hinkelmann et al.   BMC BIOINFORMATICS

Immunohistochemical Detection of Blue Light-Induced Phosphorylation of the Plasma Membrane H+-ATPase in Stomatal Guard Cells

(2011) Maki Hayashi et al.   PLANT AND CELL PHYSIOLOGY

Dynamical and Structural Analysis of a T Cell Survival Network Identifies Novel Candidate Therapeutic Targets for Large Granular Lymphocyte Leukemia

(2011) Assieh Saadatpour et al.   PLoS Computational Biology

Logic-Based Models for the Analysis of Cell Signaling Networks

(2010) Melody K. Morris et al.   BIOCHEMISTRY

Polynomial algebra of discrete models in systems biology

(2010) Alan Veliz-Cuba et al.   BIOINFORMATICS

Phosphatidic Acid Inhibits Blue Light-Induced Stomatal Opening via Inhibition of Protein Phosphatase 1

(2010) A. Takemiya et al.   PLANT PHYSIOLOGY

Diversity and Plasticity of Th Cell Types Predicted from Regulatory Network Modelling

(2010) Aurélien Naldi et al.   PLoS Computational Biology

Logical modelling of regulatory networks with GINsim 2.3

(2009) A. Naldi et al.   BIOSYSTEMS

Interaction specificity ofArabidopsis14-3-3 proteins with phototropin receptor kinases

(2009) Stuart Sullivan et al.   FEBS LETTERS

Measurement of Changes in Cytosolic Ca2+ in Arabidopsis Guard Cells and Mesophyll Cells in Response to Blue Light

(2008) A. Harada et al.   PLANT AND CELL PHYSIOLOGY

The Arabidopsis Small G Protein ROP2 Is Activated by Light in Guard Cells and Inhibits Light-Induced Stomatal Opening

(2008) B. W. Jeon et al.   PLANT CELL

Plant adaptation to fluctuating environment and biomass production are strongly dependent on guard cell potassium channels

(2008) Anne Lebaudy et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Network model of survival signaling in large granular lymphocyte leukemia

(2008) R. Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA