标题
Boolean modeling in systems biology: an overview of methodology and applications
作者
关键词
-
出版物
PHYSICAL BIOLOGY
Volume 9, Issue 5, Pages 055001
出版商
IOP Publishing
发表日期
2012-09-26
DOI
10.1088/1478-3975/9/5/055001
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- FINDING ATTRACTORS IN ASYNCHRONOUS BOOLEAN DYNAMICS
- (2011) THOMAS SKODAWESSELY et al. ADVANCES IN COMPLEX SYSTEMS
- ADAM: Analysis of Discrete Models of Biological Systems Using Computer Algebra
- (2011) Franziska Hinkelmann et al. BMC BIOINFORMATICS
- Elementary signaling modes predict the essentiality of signal transduction network components
- (2011) Rui-Sheng Wang et al. BMC Systems Biology
- Integration of Boolean models exemplified on hepatocyte signal transduction
- (2011) R. Schlatter et al. BRIEFINGS IN BIOINFORMATICS
- Comparing Signaling Networks between Normal and Transformed Hepatocytes Using Discrete Logical Models
- (2011) J. Saez-Rodriguez et al. CANCER RESEARCH
- A SAT-Based Algorithm for Finding Attractors in Synchronous Boolean Networks
- (2011) E. Dubrova et al. IEEE-ACM Transactions on Computational Biology and Bioinformatics
- Computational and Experimental Analysis Reveals a Requirement for Eosinophil-Derived IL-13 for the Development of Allergic Airway Responses in C57BL/6 Mice
- (2011) E. R. Walsh et al. JOURNAL OF IMMUNOLOGY
- Reduction of Boolean network models
- (2011) Alan Veliz-Cuba JOURNAL OF THEORETICAL BIOLOGY
- Metabolomics reveals comprehensive reprogramming involving two independent metabolic responses of Arabidopsis to UV-B light
- (2011) Miyako Kusano et al. PLANT JOURNAL
- Systems Biology--Biomedical Modeling
- (2011) E. A. Sobie et al. Science Signaling
- Dynamical and Structural Analysis of a T Cell Survival Network Identifies Novel Candidate Therapeutic Targets for Large Granular Lymphocyte Leukemia
- (2011) Assieh Saadatpour et al. PLoS Computational Biology
- Training Signaling Pathway Maps to Biochemical Data with Constrained Fuzzy Logic: Quantitative Analysis of Liver Cell Responses to Inflammatory Stimuli
- (2011) Melody K. Morris et al. PLoS Computational Biology
- Guard Cell Signal Transduction Network: Advances in Understanding Abscisic Acid, CO2, and Ca2+Signaling
- (2010) Tae-Houn Kim et al. Annual Review of Plant Biology
- Logic-Based Models for the Analysis of Cell Signaling Networks
- (2010) Melody K. Morris et al. BIOCHEMISTRY
- BoolNet—an R package for generation, reconstruction and analysis of Boolean networks
- (2010) Christoph Müssel et al. BIOINFORMATICS
- Computational modeling with forward and reverse engineering links signaling network and genomic regulatory responses: NF-κB signaling-induced gene expression responses in inflammation
- (2010) Shih Peng et al. BMC BIOINFORMATICS
- Boolean models of within-host immune interactions
- (2010) Juilee Thakar et al. CURRENT OPINION IN MICROBIOLOGY
- Computing Combinatorial Intervention Strategies and Failure Modes in Signaling Networks
- (2010) Regina Samaga et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Attractor analysis of asynchronous Boolean models of signal transduction networks
- (2010) Assieh Saadatpour et al. JOURNAL OF THEORETICAL BIOLOGY
- Boolean modeling of transcriptome data reveals novel modes of heterotrimeric G-protein action
- (2010) Sona Pandey et al. Molecular Systems Biology
- A network model for plant-pollinator community assembly
- (2010) C. Campbell et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Dynamically consistent reduction of logical regulatory graphs
- (2010) Aurélien Naldi et al. THEORETICAL COMPUTER SCIENCE
- A Boolean Model of the Gene Regulatory Network Underlying Mammalian Cortical Area Development
- (2010) Clare E. Giacomantonio et al. PLoS Computational Biology
- SimBoolNet--a Cytoscape plugin for dynamic simulation of signaling networks
- (2009) J. Zheng et al. BIOINFORMATICS
- The pairwise disconnectivity index as a new metric for the topological analysis of regulatory networks
- (2009) Anatolij P Potapov et al. BMC BIOINFORMATICS
- Transforming Boolean models to continuous models: methodology and application to T-cell receptor signaling
- (2009) Dominik M Wittmann et al. BMC Systems Biology
- ChemChains: a platform for simulation and analysis of biochemical networks aimed to laboratory scientists
- (2009) Tomáš Helikar et al. BMC Systems Biology
- Large crystal growth by thermal control allows combined X-ray and neutron crystallographic studies to elucidate the protonation states in Aspergillus flavus urate oxidase
- (2009) E. Oksanen et al. Journal of the Royal Society Interface
- Discrete logic modelling as a means to link protein signalling networks with functional analysis of mammalian signal transduction
- (2009) Julio Saez-Rodriguez et al. Molecular Systems Biology
- The Logic of EGFR/ErbB Signaling: Theoretical Properties and Analysis of High-Throughput Data
- (2009) Regina Samaga et al. PLoS Computational Biology
- Fuzzy Logic Analysis of Kinase Pathway Crosstalk in TNF/EGF/Insulin-Induced Signaling
- (2009) Bree B. Aldridge et al. PLoS Computational Biology
- ON/OFF and Beyond - A Boolean Model of Apoptosis
- (2009) Rebekka Schlatter et al. PLoS Computational Biology
- Synchronous versus asynchronous modeling of gene regulatory networks
- (2008) A. Garg et al. BIOINFORMATICS
- Logic models of pathway biology
- (2008) Steven Watterson et al. DRUG DISCOVERY TODAY
- Boolean network models of cellular regulation: prospects and limitations
- (2008) S. Bornholdt Journal of the Royal Society Interface
- Structure and function of a transcriptional network activated by the MAPK Hog1
- (2008) Andrew P Capaldi et al. NATURE GENETICS
- Mapping and quantifying mammalian transcriptomes by RNA-Seq
- (2008) Ali Mortazavi et al. NATURE METHODS
- Modelling and analysis of gene regulatory networks
- (2008) Guy Karlebach et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Functional Proteomics of Arabidopsis thaliana Guard Cells Uncovers New Stomatal Signaling Pathways
- (2008) Z. Zhao et al. PLANT CELL
- Network model of survival signaling in large granular lymphocyte leukemia
- (2008) R. Zhang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- High-Quality Binary Protein Interaction Map of the Yeast Interactome Network
- (2008) H. Yu et al. SCIENCE
- Fault Diagnosis Engineering of Digital Circuits Can Identify Vulnerable Molecules in Complex Cellular Pathways
- (2008) A. Abdi et al. Science Signaling
- The Signaling Petri Net-Based Simulator: A Non-Parametric Strategy for Characterizing the Dynamics of Cell-Specific Signaling Networks
- (2008) Derek Ruths et al. PLoS Computational Biology
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started