MC EMiNEM Maps the Interaction Landscape of the Mediator

Distinct role of Mediator tail module in regulation of SAGA-dependent, TATA-containing genes in yeast

(2011) Suraiya A Ansari et al.   EMBO JOURNAL

Architecture of the Mediator head module

(2011) Tsuyoshi Imasaki et al.   NATURE

Saccharomyces Genome Database: the genomics resource of budding yeast

(2011) J. M. Cherry et al.   NUCLEIC ACIDS RESEARCH

Direct Interaction of RNA Polymerase II and Mediator Required for Transcription in Vivo

(2011) J. Soutourina et al.   SCIENCE

Interactions between subunits of the Mediator complex with gene-specific transcription factors

(2011) Tilman Borggrefe et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Origins and activity of the Mediator complex

(2011) Ronald C. Conaway et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

GOing Bayesian: model-based gene set analysis of genome-scale data

(2010) Sebastian Bauer et al.   NUCLEIC ACIDS RESEARCH

Preparation and topology of the Mediator middle module

(2010) Tobias Koschubs et al.   NUCLEIC ACIDS RESEARCH

The BioGRID Interaction Database: 2011 update

(2010) C. Stark et al.   NUCLEIC ACIDS RESEARCH

Reconstructing signaling pathways from RNAi data using probabilistic Boolean threshold networks

(2009) Lars Kaderali et al.   BIOINFORMATICS

Nested effects models for learning signaling networks from perturbation data

(2009) Holger Fröhlich et al.   BIOMETRICAL JOURNAL

Complex Systems: From Chemistry to Systems Biology Special Feature: Modeling the temporal interplay of molecular signaling and gene expression by using dynamic nested effects models

(2009) B. Anchang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Factor Graph Nested Effects Model To Identify Networks from Genetic Perturbations

(2009) Charles J. Vaske et al.   PLoS Computational Biology

Estimating large-scale signaling networks through nested effect models with intervention effects from microarray data

(2008) H. Frohlich et al.   BIOINFORMATICS

Identification, structure, and functional requirement of the Mediator submodule Med7N/31

(2008) Tobias Koschubs et al.   EMBO JOURNAL

Structure-system correlation identifies a gene regulatory Mediator submodule

(2008) L. Lariviere et al.   GENES & DEVELOPMENT

New algorithm in the basin hopping Monte Carlo to find the global minimum structure of unary and binary metallic nanoclusters

(2008) Hyoung Gyu Kim et al.   JOURNAL OF CHEMICAL PHYSICS

Comparative genomics supports a deep evolutionary origin for the large, four-module transcriptional mediator complex

(2008) Henri-Marc Bourbon   NUCLEIC ACIDS RESEARCH

Structure Learning in Nested Effects Models

(2008) Achim Tresch et al.   Statistical Applications in Genetics and Molecular Biology