GOing Bayesian: model-based gene set analysis of genome-scale data

The Markov chain Monte Carlo revolution

(2009) Persi Diaconis   BULLETIN OF THE AMERICAN MATHEMATICAL SOCIETY

Bidirectional promoters generate pervasive transcription in yeast

(2009) Zhenyu Xu et al.   NATURE

Gene set enrichment analysis using linear models and diagnostics

(2008) Assaf P. Oron et al.   BIOINFORMATICS

Ontologizer 2.0--a multifunctional tool for GO term enrichment analysis and data exploration

(2008) S. Bauer et al.   BIOINFORMATICS

LRpath: a logistic regression approach for identifying enriched biological groups in gene expression data

(2008) Maureen A. Sartor et al.   BIOINFORMATICS

Gene-set approach for expression pattern analysis

(2008) D. Nam et al.   BRIEFINGS IN BIOINFORMATICS

Use and misuse of the gene ontology annotations

(2008) Seung Yon Rhee et al.   NATURE REVIEWS GENETICS

A probabilistic generative model for GO enrichment analysis

(2008) Yong Lu et al.   NUCLEIC ACIDS RESEARCH

The GOA database in 2009--an integrated Gene Ontology Annotation resource

(2008) D. Barrell et al.   NUCLEIC ACIDS RESEARCH

FlyBase: enhancing Drosophila Gene Ontology annotations

(2008) S. Tweedie et al.   NUCLEIC ACIDS RESEARCH