Global phylogenetic analysis of Escherichia coli and plasmids carrying the mcr-1 gene indicates bacterial diversity but plasmid restriction

Import and spread of extended-spectrum β-lactamase-producing Enterobacteriaceae by international travellers (COMBAT study): a prospective, multicentre cohort study

(2017) Maris S Arcilla et al.   LANCET INFECTIOUS DISEASES

Comprehensive resistome analysis reveals the prevalence of NDM and MCR-1 in Chinese poultry production

(2017) Yang Wang et al.   Nature Microbiology

Travelers Can Import Colistin-Resistant Enterobacteriaceae, Including Those Possessing the Plasmid-Mediatedmcr-1Gene

(2016) Odette J. Bernasconi et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Acquisition ofmcr-1Plasmid-Mediated Colistin Resistance in Escherichia coli and Klebsiella pneumoniae during Hajj 2013 and 2014

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Impact of food animal trade on the spread ofmcr-1-mediated colistin resistance, Tunisia, July 2015

(2016) Raoudha Grami et al.   Eurosurveillance

Plasmid-mediated colistin resistance (mcr-1gene): three months later, the story unfolds

(2016) Robert L. Skov et al.   Eurosurveillance

Emerging plasmid-encoded colistin resistance: the animal world as the culprit?

(2016) Laurent Poirel et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Location of colistin resistance genemcr-1in Enterobacteriaceae from livestock and meat: Table 1.

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Transferable resistance to colistin: a new but old threat: Table 1.

(2016) Stefan Schwarz et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Frequent acquisition of low-virulence strains of ESBL-producing Escherichia coli in travellers

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Dissemination of the mcr-1 colistin resistance gene

(2016) Maris S Arcilla et al.   LANCET INFECTIOUS DISEASES

Antibacterial drug discovery in the resistance era

(2016) Eric D. Brown et al.   NATURE

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

(2016) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Roary: rapid large-scale prokaryote pan genome analysis

(2015) Andrew J. Page et al.   BIOINFORMATICS

Bioinformatics of antimicrobial resistance in the age of molecular epidemiology

(2015) Andrew G McArthur et al.   CURRENT OPINION IN MICROBIOLOGY

Antimicrobial Resistance and Extended-Spectrum β-Lactamases ofSalmonella entericaSerotypes Isolated from Livestock and Processed Food in Portugal: An Update

(2015) Rui Figueiredo et al.   Foodborne Pathogens and Disease

Use of colistin-containing products within the European Union and European Economic Area (EU/EEA): development of resistance in animals and possible impact on human and animal health

(2015) Boudewijn Catry et al.   INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS

Emergence of Antimicrobial-ResistantEscherichia coliof Animal Origin Spreading in Humans

(2015) David Skurnik et al.   MOLECULAR BIOLOGY AND EVOLUTION

In SilicoDetection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing

(2014) Alessandra Carattoli et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Mechanisms of polymyxin resistance: acquired and intrinsic resistance in bacteria

(2014) Abiola O. Olaitan et al.   Frontiers in Microbiology

QUAST: quality assessment tool for genome assemblies

(2013) Alexey Gurevich et al.   BIOINFORMATICS

Antibiotic resistance—the need for global solutions

(2013) Ramanan Laxminarayan et al.   LANCET INFECTIOUS DISEASES

Hierarchical and Spatially Explicit Clustering of DNA Sequences with BAPS Software

(2013) L. Cheng et al.   MOLECULAR BIOLOGY AND EVOLUTION

Food-Borne Origins of Escherichia coli Causing Extraintestinal Infections

(2012) A. R. Manges et al.   CLINICAL INFECTIOUS DISEASES

2012 and beyond: potential for the start of a second pre-antibiotic era?

(2012) P. C. Appelbaum   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Identification of acquired antimicrobial resistance genes

(2012) E. Zankari et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Multilocus Sequence Typing of Total-Genome-Sequenced Bacteria

(2012) M. V. Larsen et al.   JOURNAL OF CLINICAL MICROBIOLOGY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

CTX-M-15-Producing Escherichia coli Clinical Isolates in Cairo (Egypt), Including Isolates of Clonal Complex ST10 and Clones ST131, ST73, and ST405 in Both Community and Hospital Settings

(2010) Nevine Fam et al.   Microbial Drug Resistance

Resurgence of Colistin: A Review of Resistance, Toxicity, Pharmacodynamics, and Dosing

(2010) Lauren M Lim et al.   PHARMACOTHERAPY

Global optimal eBURST analysis of multilocus typing data using a graphic matroid approach

(2009) Alexandre P Francisco et al.   BMC BIOINFORMATICS

Extended-spectrum β-lactamase-producing Escherichia coli in Spain belong to a large variety of multilocus sequence typing types, including ST10 complex/A, ST23 complex/A and ST131/B2

(2009) Jesús Oteo et al.   INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS

Recent developments in the MAFFT multiple sequence alignment program

(2008) K. Katoh et al.   BRIEFINGS IN BIOINFORMATICS