Impact of Immunosuppression on the Metagenomic Composition of the Intestinal Microbiome: a Systems Biology Approach to Post-Transplant Diabetes

Immunosuppressive Treatment Alters Secretion of Ileal Antimicrobial Peptides and Gut Microbiota, and Favors Subsequent Colonization by Uropathogenic Escherichia coli

(2017) Jérôme Tourret et al.   TRANSPLANTATION

Impact of Immunosuppression on the Metagenomic Composition of the Intestinal Microbiome: a Systems Biology Approach to Post-Transplant Diabetes

(2017) M. Bhat et al.   Scientific Reports

Hyperglycemia and Diabetes Mellitus Following Organ Transplantation

(2016) Rodolfo J. Galindo et al.   Current Diabetes Reports

The Intestinal Microbiome and the Liver Transplant Recipient

(2016) Iliana Doycheva et al.   TRANSPLANTATION

Meta-Analysis: Effects of Probiotic Supplementation on Lipid Profiles in Normal to Mildly Hypercholesterolemic Individuals

(2015) Mikiko Shimizu et al.   PLoS One

Diabetes Is a Major Risk Factor for Mortality After Lung Transplantation

(2014) K. L. Hackman et al.   AMERICAN JOURNAL OF TRANSPLANTATION

STAMP: statistical analysis of taxonomic and functional profiles

(2014) Donovan H. Parks et al.   BIOINFORMATICS

Insights Into the Role of the Microbiome in Obesity and Type 2 Diabetes

(2014) Annick V. Hartstra et al.   DIABETES CARE

Tacrolimus reversibly reduces insulin secretion, induces insulin resistance, and causes islet cell damage in rats

(2014) Chun Xu et al.   INTERNATIONAL JOURNAL OF CLINICAL PHARMACOLOGY AND THERAPEUTICS

Gut Microbial Community Structure and Complications After Kidney Transplantation

(2014) John R. Lee et al.   TRANSPLANTATION

Transfer of gut microbiota from lean and obese mice to antibiotic-treated mice

(2014) Merete Ellekilde et al.   Scientific Reports

Comparison of 5% versus 15% sucrose intakes as part of a eucaloric diet in overweight and obese subjects: Effects on insulin sensitivity, glucose metabolism, vascular compliance, body composition and lipid profile. A Randomised Controlled Trial

(2013) Anthony S. Lewis et al.   METABOLISM-CLINICAL AND EXPERIMENTAL

Richness of human gut microbiome correlates with metabolic markers

(2013) Emmanuelle Le Chatelier et al.   NATURE

Gut metagenome in European women with normal, impaired and diabetic glucose control

(2013) Fredrik H. Karlsson et al.   NATURE

Beneficial effects of Lactobacillus plantarum on glycemia and homocysteine levels in postmenopausal women with metabolic syndrome

(2013) Fabíola Málaga Barreto et al.   NUTRITION

New onset of diabetes after transplantation — An overview of epidemiology, mechanism of development and diagnosis

(2013) Sailaja Kesiraju et al.   TRANSPLANT IMMUNOLOGY

EMPeror: a tool for visualizing high-throughput microbial community data

(2013) Yoshiki Vázquez-Baeza et al.   GigaScience

Transfer of Intestinal Microbiota From Lean Donors Increases Insulin Sensitivity in Individuals With Metabolic Syndrome

(2012) Anne Vrieze et al.   GASTROENTEROLOGY

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

A metagenome-wide association study of gut microbiota in type 2 diabetes

(2012) Junjie Qin et al.   NATURE

Metagenomic microbial community profiling using unique clade-specific marker genes

(2012) Nicola Segata et al.   NATURE METHODS

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

(2012) Nicholas A Bokulich et al.   NATURE METHODS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Metabolism of Oligosaccharides and Starch in Lactobacilli: A Review

(2012) Michael G. Gänzle et al.   Frontiers in Microbiology

Incidence and Risk Factors for Post–Renal Transplant Diabetes Mellitus

(2011) I. Hadj Ali et al.   TRANSPLANTATION PROCEEDINGS

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

NAViGaTOR: Network Analysis, Visualization and Graphing Toronto

(2009) Kevin R. Brown et al.   BIOINFORMATICS

Butyrate Improves Insulin Sensitivity and Increases Energy Expenditure in Mice

(2009) Z. Gao et al.   DIABETES

Microbiota and SCFA in Lean and Overweight Healthy Subjects

(2009) Andreas Schwiertz et al.   Obesity