A large-scale benchmark of gene prioritization methods

Prediction and Validation of Disease Genes Using HeteSim Scores

(2017) Xiangxiang Zeng et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Disease Gene Prioritization Using Network and Feature

(2015) Bingqing Xie et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Pathway-Dependent Effectiveness of Network Algorithms for Gene Prioritization

(2015) Jung Eun Shim et al.   PLoS One

Network-based Phenome-Genome Association Prediction by Bi-Random Walk

(2015) MaoQiang Xie et al.   PLoS One

MaxLink: network-based prioritization of genes tightly linked to a disease seed set

(2014) Dimitri Guala et al.   BIOINFORMATICS

STRING v10: protein–protein interaction networks, integrated over the tree of life

(2014) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Neighbor-favoring weight reinforcement to improve random walk-based disease gene prioritization

(2013) Duc-Hau Le et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

FunCoup 3.0: database of genome-wide functional coupling networks

(2013) Thomas Schmitt et al.   NUCLEIC ACIDS RESEARCH

Chapter 15: Disease Gene Prioritization

(2013) Yana Bromberg   PLoS Computational Biology

An unbiased evaluation of gene prioritization tools

(2012) Daniela Börnigen et al.   BIOINFORMATICS

RESQUE: Network reduction using semi-Markov random walk scores for efficient querying of biological networks

(2012) Sayed Mohammad Ebrahim Sahraeian et al.   BIOINFORMATICS

Computational tools for prioritizing candidate genes: boosting disease gene discovery

(2012) Yves Moreau et al.   NATURE REVIEWS GENETICS

Exploiting Protein-Protein Interaction Networks for Genome-Wide Disease-Gene Prioritization

(2012) Emre Guney et al.   PLoS One

Recent approaches to the prioritization of candidate disease genes

(2012) Nadezhda T. Doncheva et al.   Wiley Interdisciplinary Reviews-Systems Biology and Medicine

Prioritizing disease candidate genes by a gene interconnectedness-based approach

(2011) Chia-Lang Hsu et al.   BMC GENOMICS

Prioritizing candidate disease genes by network-based boosting of genome-wide association data

(2011) I. Lee et al.   GENOME RESEARCH

Comparative interactomics with Funcoup 2.0

(2011) A. Alexeyenko et al.   NUCLEIC ACIDS RESEARCH

PINTA: a web server for network-based gene prioritization from expression data

(2011) D. Nitsch et al.   NUCLEIC ACIDS RESEARCH

A guide to web tools to prioritize candidate genes

(2010) L.-C. Tranchevent et al.   BRIEFINGS IN BIOINFORMATICS

Associating Genes and Protein Complexes with Disease via Network Propagation

(2010) Oron Vanunu et al.   PLoS Computational Biology

Disease candidate gene identification and prioritization using protein interaction networks

(2009) Jing Chen et al.   BMC BIOINFORMATICS

Global networks of functional coupling in eukaryotes from comprehensive data integration

(2009) A. Alexeyenko et al.   GENOME RESEARCH

Network-based Identification of Novel Cancer Genes

(2009) Gabriel Östlund et al.   MOLECULAR & CELLULAR PROTEOMICS

Walking the Interactome for Prioritization of Candidate Disease Genes

(2008) Sebastian Köhler et al.   AMERICAN JOURNAL OF HUMAN GENETICS

ENDEAVOUR update: a web resource for gene prioritization in multiple species

(2008) L.-C. Tranchevent et al.   NUCLEIC ACIDS RESEARCH